PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Lsic01G0004140.1 Alkaloid G8O/G8H medium borderline
Lsic01G0005010.1 Alkaloid G8O/G8H medium borderline
Lsic01G0007130.1 Alkaloid G8O/G8H medium borderline
Lsic01G0007140.1 Alkaloid G8O/G8H medium pass
Lsic01G0007180.1 Alkaloid G8O/G8H medium borderline
Lsic02G0004320.1 Alkaloid G8O/G8H medium borderline
Lsic02G0004340.1 Alkaloid G8O/G8H medium borderline
Lsic02G0004350.1 Alkaloid G8O/G8H medium borderline
Lsic02G0020170.1 Alkaloid G8O/G8H medium borderline
Lsic02G0025960.1 Alkaloid G8O/G8H low borderline
Lsic03G0012200.1 Alkaloid G8O/G8H low borderline
Lsic03G0017140.1 Alkaloid G8O/G8H medium borderline
Lsic04G0015050.1 Alkaloid G8O/G8H medium borderline
Lsic04G0016080.1 Alkaloid G8O/G8H medium borderline
Lsic04G0016260.1 Alkaloid G8O/G8H medium borderline
Lsic04G0023680.1 Alkaloid G8O/G8H medium borderline
Lsic05G0019140.1 Alkaloid G8O/G8H medium borderline
Lsic05G0019780.1 Alkaloid G8O/G8H low borderline
Lsic05G0021280.1 Alkaloid G8O/G8H medium borderline
Lsic06G0005610.1 Alkaloid G8O/G8H medium borderline
Lsic06G0005630.1 Alkaloid G8O/G8H medium borderline
Lsic06G0005650.1 Alkaloid G8O/G8H medium borderline
Lsic06G0005670.1 Alkaloid G8O/G8H medium borderline
Lsic08G0009030.1 Alkaloid G8O/G8H medium borderline
Lsic08G0015090.1 Alkaloid G8O/G8H medium borderline
Lsic09G0003460.1 Alkaloid G8O/G8H medium borderline
Lsic09G0003510.1 Alkaloid G8O/G8H medium borderline
Lsic09G0003520.1 Alkaloid G8O/G8H medium borderline
Lsic09G0005820.1 Alkaloid G8O/G8H medium borderline
Lsic09G0015330.1 Alkaloid G8O/G8H low borderline
Lsic09G0017870.1 Alkaloid G8O/G8H medium borderline
Lsic10G0001640.1 Alkaloid G8O/G8H medium borderline
Lsic10G0001710.1 Alkaloid G8O/G8H medium borderline
Lsic10G0002200.1 Alkaloid G8O/G8H medium borderline
Lsic10G0002470.1 Alkaloid G8O/G8H medium borderline
Lsic10G0002510.1 Alkaloid G8O/G8H medium borderline