PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
Lsic01G0000540.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Lsic01G0000550.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Lsic01G0000560.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Lsic01G0000570.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic01G0000580.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic01G0000590.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic01G0000600.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009640.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic02G0009650.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic02G0009660.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic02G0009670.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic02G0009680.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Lsic02G0009690.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009700.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009710.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009720.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009730.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009740.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009750.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009760.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009770.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009780.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009790.1 Alkaloid BBE low borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009800.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic02G0009850.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0009860.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Lsic02G0014560.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Lsic03G0001460.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH