PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Lsic02G0013760.1 Alkaloid PYKS low borderline
Lsic03G0013140.1 Alkaloid PYKS low borderline
Lsic04G0002550.1 Alkaloid PYKS low borderline
Lsic04G0008440.1 Alkaloid PYKS low borderline
Lsic04G0008470.1 Alkaloid PYKS low borderline
Lsic04G0013700.1 Alkaloid PYKS low borderline
Lsic05G0004330.1 Alkaloid PYKS high pass
Lsic05G0004340.1 Alkaloid PYKS high pass
Lsic05G0004350.1 Alkaloid PYKS high pass
Lsic05G0004370.1 Alkaloid PYKS medium pass
Lsic05G0004380.1 Alkaloid PYKS medium pass
Lsic05G0012910.1 Alkaloid PYKS low borderline
Lsic05G0016540.1 Alkaloid PYKS low borderline
Lsic05G0021730.1 Alkaloid PYKS low borderline
Lsic05G0021960.1 Alkaloid PYKS medium pass
Lsic06G0009250.1 Alkaloid PYKS low borderline
Lsic08G0004720.1 Alkaloid PYKS high pass
Lsic08G0004730.1 Alkaloid PYKS medium pass
Lsic08G0004740.1 Alkaloid PYKS medium pass
Lsic08G0013970.1 Alkaloid PYKS low borderline
Lsic09G0004020.1 Alkaloid PYKS low borderline
Lsic09G0011580.1 Alkaloid PYKS high pass
Lsic10G0013380.1 Alkaloid PYKS low borderline
Lsic11G0011100.1 Alkaloid PYKS low borderline
Lsic11G0011760.1 Alkaloid PYKS high pass