PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Lsic01G0016110.1 Alkaloid H6H low borderline
Lsic02G0002920.1 Alkaloid H6H low borderline
Lsic02G0022030.1 Alkaloid H6H low borderline
Lsic02G0022040.1 Alkaloid H6H low borderline
Lsic02G0022190.1 Alkaloid H6H high pass
Lsic02G0022200.1 Alkaloid H6H high pass
Lsic02G0022210.1 Alkaloid H6H high pass
Lsic02G0022250.1 Alkaloid H6H medium borderline
Lsic02G0022260.1 Alkaloid H6H medium pass
Lsic02G0022580.1 Alkaloid H6H low borderline
Lsic02G0024970.1 Alkaloid H6H low borderline
Lsic02G0027510.1 Alkaloid H6H low borderline
Lsic02G0027530.1 Alkaloid H6H low borderline
Lsic02G0027540.1 Alkaloid H6H low borderline
Lsic03G0009640.1 Alkaloid H6H medium borderline
Lsic03G0016080.1 Alkaloid H6H low borderline
Lsic03G0019660.1 Alkaloid H6H medium borderline
Lsic04G0010940.1 Alkaloid H6H low borderline
Lsic04G0011240.1 Alkaloid H6H low borderline
Lsic05G0015260.1 Alkaloid H6H medium borderline
Lsic05G0017100.1 Alkaloid H6H low borderline
Lsic05G0017110.1 Alkaloid H6H low borderline
Lsic05G0017150.1 Alkaloid H6H medium pass
Lsic05G0017170.1 Alkaloid H6H medium pass
Lsic06G0010230.1 Alkaloid H6H medium pass
Lsic07G0001050.1 Alkaloid H6H low borderline
Lsic07G0003200.1 Alkaloid H6H medium borderline
Lsic07G0005210.1 Alkaloid H6H low borderline
Lsic07G0008540.1 Alkaloid H6H low borderline
Lsic07G0011050.1 Alkaloid H6H high pass
Lsic08G0003320.1 Alkaloid H6H medium borderline
Lsic08G0004870.1 Alkaloid H6H medium pass
Lsic09G0012450.1 Alkaloid H6H medium pass
Lsic09G0015640.1 Alkaloid H6H low borderline
Lsic10G0001890.1 Alkaloid H6H low borderline
Lsic10G0002740.1 Alkaloid H6H medium borderline
Lsic11G0002320.1 Alkaloid H6H low borderline
Lsic11G0002330.1 Alkaloid H6H low borderline
Lsic11G0010350.1 Alkaloid H6H medium borderline
Lsic11G0010370.1 Alkaloid H6H low borderline
Lsic11G0010380.1 Alkaloid H6H medium borderline
Lsic11G0010400.1 Alkaloid H6H medium pass
Lsic11G0016700.1 Alkaloid H6H medium pass