PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
Lsic01G0000780.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic01G0009580.1 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic02G0000510.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic02G0007170.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic03G0002440.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic03G0005210.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic03G0010770.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic04G0000670.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic04G0015270.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic04G0018350.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic06G0003360.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic07G0004850.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic08G0013530.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic08G0013590.1 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic08G0016340.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic09G0010310.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Lsic10G0000950.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic10G0004050.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic11G0007820.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic11G0007830.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic11G0011270.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Lsic11G0013020.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL