PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Lsic01G0006540.1 Alkaloid IO low borderline
Lsic01G0009430.1 Alkaloid IO medium borderline
Lsic01G0009440.1 Alkaloid IO medium borderline
Lsic01G0010640.1 Alkaloid IO low borderline
Lsic01G0010720.1 Alkaloid IO low borderline
Lsic02G0025950.1 Alkaloid IO medium borderline
Lsic03G0012770.1 Alkaloid IO low borderline
Lsic03G0019480.1 Alkaloid IO medium borderline
Lsic04G0001330.1 Alkaloid IO medium borderline
Lsic04G0006790.1 Alkaloid IO medium borderline
Lsic04G0009720.1 Alkaloid IO low borderline
Lsic04G0014190.1 Alkaloid IO medium borderline
Lsic04G0016090.1 Alkaloid IO medium borderline
Lsic04G0016120.1 Alkaloid IO medium borderline
Lsic04G0016150.1 Alkaloid IO medium borderline
Lsic04G0016160.1 Alkaloid IO medium borderline
Lsic04G0016180.1 Alkaloid IO medium borderline
Lsic04G0016240.1 Alkaloid IO medium borderline
Lsic04G0016300.1 Alkaloid IO medium borderline
Lsic07G0003900.1 Alkaloid IO medium borderline
Lsic07G0005640.1 Alkaloid IO low borderline
Lsic08G0006590.1 Alkaloid IO medium borderline
Lsic08G0014260.1 Alkaloid IO low borderline
Lsic09G0000550.1 Alkaloid IO medium borderline
Lsic09G0003480.1 Alkaloid IO medium borderline
Lsic09G0003490.1 Alkaloid IO medium borderline
Lsic09G0003810.1 Alkaloid IO medium borderline
Lsic09G0016570.1 Alkaloid IO medium pass
Lsic09G0017850.1 Alkaloid IO medium borderline
Lsic09G0017880.1 Alkaloid IO medium borderline
Lsic10G0001650.1 Alkaloid IO medium borderline
Lsic10G0001690.1 Alkaloid IO medium pass
Lsic10G0001700.1 Alkaloid IO medium borderline
Lsic10G0001770.1 Alkaloid IO medium borderline
Lsic11G0010510.1 Alkaloid IO low borderline
Lsic11G0010520.1 Alkaloid IO low borderline