PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Lsic01G0007410.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic01G0007430.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Lsic01G0013380.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic01G0015140.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic01G0015150.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic01G0015290.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic02G0000010.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic02G0002240.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic02G0012480.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic02G0013050.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic02G0014260.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic03G0002900.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic03G0003260.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic03G0007930.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Lsic03G0021170.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic03G0021190.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic03G0021770.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic04G0017900.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Lsic05G0013230.1 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
Lsic06G0004500.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic06G0004510.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Lsic06G0004520.1 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
Lsic07G0002590.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Lsic10G0009040.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic10G0009060.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic10G0009080.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Lsic10G0013230.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Lsic11G0014470.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH