PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Lsic02G0003590.1 Alkaloid PMT medium borderline
Lsic02G0026590.1 Alkaloid PMT low borderline
Lsic02G0026610.1 Alkaloid PMT low borderline
Lsic04G0005350.1 Alkaloid PMT medium borderline
Lsic04G0007240.1 Alkaloid PMT medium pass
Lsic04G0016990.1 Alkaloid PMT low borderline
Lsic05G0000860.1 Alkaloid PMT medium borderline
Lsic05G0014270.1 Alkaloid PMT medium pass
Lsic05G0015290.1 Alkaloid PMT low borderline
Lsic06G0015420.1 Alkaloid PMT medium borderline
Lsic06G0016580.1 Alkaloid PMT low borderline
Lsic08G0008360.1 Alkaloid PMT low borderline
Lsic08G0013730.1 Alkaloid PMT low borderline
Lsic09G0000280.1 Alkaloid PMT medium borderline
Lsic10G0001950.1 Alkaloid PMT low borderline
Lsic10G0001960.1 Alkaloid PMT medium pass
Lsic10G0001990.1 Alkaloid PMT medium pass
Lsic10G0002000.1 Alkaloid PMT low borderline
Lsic10G0002030.1 Alkaloid PMT medium pass
Lsic10G0002040.1 Alkaloid PMT low borderline
Lsic10G0002050.1 Alkaloid PMT medium pass
Lsic11G0001660.1 Alkaloid PMT medium pass