Lagenaria siceraria (lagenaria_siceraria)
Imported from atlas release summary for Lagenaria siceraria.
1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1315
Candidate Genes
C4H
6.74%
C3'H/CYP98A
6.01%
BAHD
4.89%
CYP76
4.71%
UGT
4.35%
7DLGT
4.17%
UFGT
4.05%
IFS
3.53%
Other Families
61.55%
More Families (96)
4CL
111
3.35%
POD
109
3.29%
T3O
103
3.11%
DWF4/CYP90B1
80
2.42%
F3'H/CYP75B
79
2.39%
F3H
67
2.02%
NMT
58
1.75%
BR6OX2/CYP85A2
57
1.72%
CAS
49
1.48%
STR
46
1.39%
PAL
45
1.36%
H6H
43
1.3%
CAD
43
1.3%
TPS
43
1.3%
SGD
42
1.27%
GES
39
1.18%
CODM/T6ODM
39
1.18%
SMT1/SMT2/SMT3
37
1.12%
G8O/G8H
36
1.09%
IO
36
1.09%
HCT
36
1.09%
IFR
35
1.06%
CYP90D1
35
1.06%
T16H
32
0.97%
COMT
30
0.91%
TRI/TRII
29
0.88%
BBE
28
0.85%
LAC
28
0.85%
CYP71
28
0.85%
F3'5'H/CYP75A
27
0.82%
F5H/CYP84A
27
0.82%
TAT
27
0.82%
PYKS
25
0.76%
16OMT
25
0.76%
GS
22
0.66%
PMT
22
0.66%
CSE
22
0.66%
FNS
21
0.63%
CYP51G1
19
0.57%
7DLH
18
0.54%
CCR
18
0.54%
BR6OX1/CYP85A1
17
0.51%
SLS
16
0.48%
8HGO
14
0.42%
ANS/LDOX
14
0.42%
RAS
14
0.42%
CNMT
13
0.39%
ANR
13
0.39%
CPD/CYP90A1
13
0.39%
NCS
12
0.36%
COR
11
0.33%
CYP80B1
11
0.33%
DFR
11
0.33%
CHS
11
0.33%
ROT3/CYP90C1
8
0.24%
LAMT
7
0.21%
MPO
7
0.21%
HPPR
7
0.21%
6OMT_4OMT_SOMT
6
0.18%
GGPPS
6
0.18%
AACT
6
0.18%
DXS
6
0.18%
CYP719
5
0.15%
CCoAOMT
5
0.15%
CPR
5
0.15%
DET2
5
0.15%
SQE
5
0.15%
SQS/FDFT1
5
0.15%
FPPS
5
0.15%
MVK
5
0.15%
ODC
4
0.12%
CHI
4
0.12%
PMK
4
0.12%
HMGR
4
0.12%
TYDC_DDC
3
0.09%
FLS
3
0.09%
CPI1
3
0.09%
SMO1/SMO2
3
0.09%
DWF1
3
0.09%
MVD
3
0.09%
ISY
2
0.06%
XMT_MXMT_DXMT
2
0.06%
DWF5
2
0.06%
HYD1
2
0.06%
MDS/IspF
2
0.06%
MCT/IspD
2
0.06%
CMK/IspE
2
0.06%
IDI
2
0.06%
HDR/IspH
2
0.06%
TDC
1
0.03%
ADC
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 387 | 19 | UGT (133) | View species results |
| Alkaloid pathway | 279 | 22 | 7DLGT (61) | View species results |
| Phenylpropanoid pathway | 245 | 11 | POD (97) | View species results |
| Flavonoid pathway | 203 | 12 | UFGT (123) | View species results |
| Rosmarinic acid pathway | 127 | 7 | C4H (51) | View species results |
| Steroid pathway | 74 | 11 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1342 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 212 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Lsic00G0000650.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic00G0000670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic01G0011970.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic01G0016620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Lsic02G0002960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic02G0010870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Lsic02G0013350.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Lsic02G0025080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic02G0025090.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic02G0025100.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic03G0018560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic03G0018570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic03G0018580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic03G0018590.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic03G0021350.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Lsic03G0022590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic04G0009070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Lsic05G0002050.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Lsic05G0004500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic05G0004510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic05G0013150.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic06G0001340.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic06G0001350.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic06G0008720.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Lsic08G0006270.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Lsic08G0016090.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Lsic09G0005530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Lsic09G0008130.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Lsic11G0016030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |