PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.43% Alkaloid pathway 21.22% Phenylpropanoid pathway 18.63% Flavonoid pathway 15.44% Rosmarinic acid pathway 9.66% Steroid pathway 5.63%
Family Distribution
C4H 6.74% C3'H/CYP98A 6.01% BAHD 4.89% CYP76 4.71% UGT 4.35% 7DLGT 4.17% UFGT 4.05% IFS 3.53%
Other Families 61.55%
More Families (96)
4CL 111 3.35% POD 109 3.29% T3O 103 3.11% DWF4/CYP90B1 80 2.42% F3'H/CYP75B 79 2.39% F3H 67 2.02% NMT 58 1.75% BR6OX2/CYP85A2 57 1.72% CAS 49 1.48% STR 46 1.39% PAL 45 1.36% H6H 43 1.3% CAD 43 1.3% TPS 43 1.3% SGD 42 1.27% GES 39 1.18% CODM/T6ODM 39 1.18% SMT1/SMT2/SMT3 37 1.12% G8O/G8H 36 1.09% IO 36 1.09% HCT 36 1.09% IFR 35 1.06% CYP90D1 35 1.06% T16H 32 0.97% COMT 30 0.91% TRI/TRII 29 0.88% BBE 28 0.85% LAC 28 0.85% CYP71 28 0.85% F3'5'H/CYP75A 27 0.82% F5H/CYP84A 27 0.82% TAT 27 0.82% PYKS 25 0.76% 16OMT 25 0.76% GS 22 0.66% PMT 22 0.66% CSE 22 0.66% FNS 21 0.63% CYP51G1 19 0.57% 7DLH 18 0.54% CCR 18 0.54% BR6OX1/CYP85A1 17 0.51% SLS 16 0.48% 8HGO 14 0.42% ANS/LDOX 14 0.42% RAS 14 0.42% CNMT 13 0.39% ANR 13 0.39% CPD/CYP90A1 13 0.39% NCS 12 0.36% COR 11 0.33% CYP80B1 11 0.33% DFR 11 0.33% CHS 11 0.33% ROT3/CYP90C1 8 0.24% LAMT 7 0.21% MPO 7 0.21% HPPR 7 0.21% 6OMT_4OMT_SOMT 6 0.18% GGPPS 6 0.18% AACT 6 0.18% DXS 6 0.18% CYP719 5 0.15% CCoAOMT 5 0.15% CPR 5 0.15% DET2 5 0.15% SQE 5 0.15% SQS/FDFT1 5 0.15% FPPS 5 0.15% MVK 5 0.15% ODC 4 0.12% CHI 4 0.12% PMK 4 0.12% HMGR 4 0.12% TYDC_DDC 3 0.09% FLS 3 0.09% CPI1 3 0.09% SMO1/SMO2 3 0.09% DWF1 3 0.09% MVD 3 0.09% ISY 2 0.06% XMT_MXMT_DXMT 2 0.06% DWF5 2 0.06% HYD1 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% CMK/IspE 2 0.06% IDI 2 0.06% HDR/IspH 2 0.06% TDC 1 0.03% ADC 1 0.03% FK 1 0.03% DWF7 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Lsic10G0005270.1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Lsic10G0007150.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Lsic10G0012170.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Lsic10G0012320.1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Lsic11G0000440.1 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Lsic11G0008940.1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Lsic11G0009910.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Lsic11G0014840.1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH