PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Lsic04G0012090.1 Alkaloid T3O medium pass
Lsic04G0012100.1 Alkaloid T3O medium pass
Lsic04G0015100.1 Alkaloid T3O medium borderline
Lsic04G0015110.1 Alkaloid T3O medium borderline
Lsic04G0015630.1 Alkaloid T3O medium pass
Lsic04G0016200.1 Alkaloid T3O medium borderline
Lsic04G0016220.1 Alkaloid T3O medium borderline
Lsic04G0016270.1 Alkaloid T3O medium borderline
Lsic05G0000630.1 Alkaloid T3O low borderline
Lsic05G0000640.1 Alkaloid T3O medium pass
Lsic05G0000660.1 Alkaloid T3O medium pass
Lsic05G0005560.1 Alkaloid T3O medium borderline
Lsic05G0007430.1 Alkaloid T3O medium borderline
Lsic05G0008060.1 Alkaloid T3O medium pass
Lsic05G0009820.1 Alkaloid T3O low borderline
Lsic05G0010630.1 Alkaloid T3O medium borderline
Lsic05G0010640.1 Alkaloid T3O medium borderline
Lsic05G0010650.1 Alkaloid T3O medium borderline
Lsic05G0019840.1 Alkaloid T3O medium pass
Lsic06G0006510.1 Alkaloid T3O medium pass
Lsic06G0012570.1 Alkaloid T3O medium pass
Lsic06G0014210.1 Alkaloid T3O medium borderline
Lsic06G0015910.1 Alkaloid T3O medium borderline
Lsic07G0002050.1 Alkaloid T3O medium pass
Lsic07G0002250.1 Alkaloid T3O medium borderline
Lsic07G0006240.1 Alkaloid T3O medium borderline
Lsic07G0006250.1 Alkaloid T3O medium borderline
Lsic07G0006680.1 Alkaloid T3O medium borderline
Lsic07G0007760.1 Alkaloid T3O medium pass
Lsic07G0012200.1 Alkaloid T3O medium pass
Lsic07G0013880.1 Alkaloid T3O medium pass
Lsic07G0014740.1 Alkaloid T3O low borderline
Lsic08G0013780.1 Alkaloid T3O medium pass
Lsic09G0003390.1 Alkaloid T3O medium borderline
Lsic09G0003470.1 Alkaloid T3O medium borderline
Lsic09G0003500.1 Alkaloid T3O medium borderline
Lsic09G0003840.1 Alkaloid T3O medium borderline
Lsic09G0003850.1 Alkaloid T3O medium borderline
Lsic09G0004660.1 Alkaloid T3O medium pass
Lsic09G0005830.1 Alkaloid T3O medium borderline
Lsic09G0005880.1 Alkaloid T3O medium borderline
Lsic09G0005890.1 Alkaloid T3O medium borderline
Lsic09G0011300.1 Alkaloid T3O medium pass
Lsic09G0017800.1 Alkaloid T3O medium pass
Lsic09G0018690.1 Alkaloid T3O low borderline
Lsic10G0001680.1 Alkaloid T3O medium borderline
Lsic10G0001720.1 Alkaloid T3O medium borderline
Lsic10G0006810.1 Alkaloid T3O medium borderline
Lsic11G0000820.1 Alkaloid T3O medium borderline
Lsic11G0000900.1 Alkaloid T3O medium borderline