PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.93% Alkaloid pathway 22.69% Phenylpropanoid pathway 20.45% Flavonoid pathway 13.01% Rosmarinic acid pathway 9.1% Steroid pathway 4.82%
Family Distribution
C4H 6.24% C3'H/CYP98A 6.02% BAHD 5.99% UGT 4.32% CYP76 3.91% POD 3.8% 7DLGT 3.61% UFGT 3.58%
Other Families 62.53%
More Families (98)
IFS 213 3.56% 4CL 213 3.56% T3O 204 3.41% F3H 161 2.69% F3'H/CYP75B 132 2.21% DWF4/CYP90B1 128 2.14% BR6OX2/CYP85A2 125 2.09% NMT 120 2.01% TRI/TRII 107 1.79% STR 106 1.77% CYP71 99 1.66% CODM/T6ODM 95 1.59% CAD 91 1.52% SMT1/SMT2/SMT3 84 1.41% H6H 74 1.24% CSE 72 1.2% LAC 71 1.19% CAS 62 1.04% TPS 61 1.02% PYKS 58 0.97% SGD 57 0.95% IFR 57 0.95% HCT 56 0.94% CYP90D1 53 0.89% GES 51 0.85% T16H 51 0.85% BBE 45 0.75% 7DLH 45 0.75% COMT 45 0.75% RAS 45 0.75% IO 43 0.72% GS 41 0.69% F3'5'H/CYP75A 38 0.64% G8O/G8H 37 0.62% ANR 37 0.62% PMT 33 0.55% NCS 33 0.55% SLS 32 0.54% 16OMT 32 0.54% TAT 32 0.54% FNS 30 0.5% CYP51G1 30 0.5% F5H/CYP84A 26 0.43% BR6OX1/CYP85A1 26 0.43% CCR 25 0.42% 8HGO 22 0.37% DFR 21 0.35% COR 20 0.33% CPD/CYP90A1 20 0.33% PAL 19 0.32% ANS/LDOX 18 0.3% CNMT 17 0.28% MPO 17 0.28% CPR 17 0.28% ROT3/CYP90C1 17 0.28% GGPPS 17 0.28% HPPR 16 0.27% ISY 15 0.25% CYP80B1 15 0.25% CHS 13 0.22% DXS 13 0.22% SQS/FDFT1 12 0.2% AACT 12 0.2% CYP719 11 0.18% SMO1/SMO2 11 0.18% FPPS 11 0.18% CCoAOMT 10 0.17% MVK 9 0.15% DET2 8 0.13% MVD 8 0.13% CHI 7 0.12% HYD1 7 0.12% SQE 6 0.1% TYDC_DDC 5 0.08% 6OMT_4OMT_SOMT 5 0.08% LAMT 5 0.08% DWF5 5 0.08% HDR/IspH 5 0.08% HDS/IspG 5 0.08% MCT/IspD 4 0.07% CYP80F1 3 0.05% ADC 3 0.05% DWF1 3 0.05% PMK 3 0.05% MDS/IspF 3 0.05% TDC 2 0.03% ODC 2 0.03% XMT_MXMT_DXMT 2 0.03% FLS 2 0.03% DWF7 2 0.03% CPI1 2 0.03% HMGS 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% IDI 2 0.03% HMGR 2 0.03% FK 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Lusiscaffold960426920.1 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Lusiscaffold9700428170.1 Terpenoid BAHD low borderline BAHD__00032__sp_P0DO84_AT_STRNX
Lusiscaffold980430770.1 Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Lusiscaffold980432090.1 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Lusiscaffold9890433730.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Lusiscaffold9930434130.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Lusiscaffold9930434140.1 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Lusiscaffold9930434150.1 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH