Linum usitatissimum (linum_usitatissimum)
Imported from atlas release summary for Linum usitatissimum.
2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2406
Candidate Genes
C4H
6.24%
C3'H/CYP98A
6.02%
BAHD
5.99%
UGT
4.32%
CYP76
3.91%
POD
3.8%
7DLGT
3.61%
UFGT
3.58%
Other Families
62.53%
More Families (98)
IFS
213
3.56%
4CL
213
3.56%
T3O
204
3.41%
F3H
161
2.69%
F3'H/CYP75B
132
2.21%
DWF4/CYP90B1
128
2.14%
BR6OX2/CYP85A2
125
2.09%
NMT
120
2.01%
TRI/TRII
107
1.79%
STR
106
1.77%
CYP71
99
1.66%
CODM/T6ODM
95
1.59%
CAD
91
1.52%
SMT1/SMT2/SMT3
84
1.41%
H6H
74
1.24%
CSE
72
1.2%
LAC
71
1.19%
CAS
62
1.04%
TPS
61
1.02%
PYKS
58
0.97%
SGD
57
0.95%
IFR
57
0.95%
HCT
56
0.94%
CYP90D1
53
0.89%
GES
51
0.85%
T16H
51
0.85%
BBE
45
0.75%
7DLH
45
0.75%
COMT
45
0.75%
RAS
45
0.75%
IO
43
0.72%
GS
41
0.69%
F3'5'H/CYP75A
38
0.64%
G8O/G8H
37
0.62%
ANR
37
0.62%
PMT
33
0.55%
NCS
33
0.55%
SLS
32
0.54%
16OMT
32
0.54%
TAT
32
0.54%
FNS
30
0.5%
CYP51G1
30
0.5%
F5H/CYP84A
26
0.43%
BR6OX1/CYP85A1
26
0.43%
CCR
25
0.42%
8HGO
22
0.37%
DFR
21
0.35%
COR
20
0.33%
CPD/CYP90A1
20
0.33%
PAL
19
0.32%
ANS/LDOX
18
0.3%
CNMT
17
0.28%
MPO
17
0.28%
CPR
17
0.28%
ROT3/CYP90C1
17
0.28%
GGPPS
17
0.28%
HPPR
16
0.27%
ISY
15
0.25%
CYP80B1
15
0.25%
CHS
13
0.22%
DXS
13
0.22%
SQS/FDFT1
12
0.2%
AACT
12
0.2%
CYP719
11
0.18%
SMO1/SMO2
11
0.18%
FPPS
11
0.18%
CCoAOMT
10
0.17%
MVK
9
0.15%
DET2
8
0.13%
MVD
8
0.13%
CHI
7
0.12%
HYD1
7
0.12%
SQE
6
0.1%
TYDC_DDC
5
0.08%
6OMT_4OMT_SOMT
5
0.08%
LAMT
5
0.08%
DWF5
5
0.08%
HDR/IspH
5
0.08%
HDS/IspG
5
0.08%
MCT/IspD
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
DWF1
3
0.05%
PMK
3
0.05%
MDS/IspF
3
0.05%
TDC
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
HMGS
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HMGR
2
0.03%
FK
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 720 | 20 | BAHD (265) | View species results |
| Alkaloid pathway | 546 | 26 | 7DLGT (120) | View species results |
| Phenylpropanoid pathway | 492 | 12 | POD (211) | View species results |
| Flavonoid pathway | 313 | 11 | UFGT (198) | View species results |
| Rosmarinic acid pathway | 219 | 7 | C4H (89) | View species results |
| Steroid pathway | 116 | 12 | CAS (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2315 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Lusiscaffold1120016710.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold11680025370.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold11680025380.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold1250042620.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Lusiscaffold1270044530.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold13310051830.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Lusiscaffold1450061700.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold1530073520.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold1530073530.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold1550075200.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Lusiscaffold16350088820.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Lusiscaffold1720094790.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold1720094800.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold1720094920.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold1720095640.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold1770098210.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Lusiscaffold1960110740.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold1960110750.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold2250132030.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Lusiscaffold2250132040.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold2720158790.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Lusiscaffold2720159640.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Lusiscaffold2720162050.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold2730163600.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold2730163740.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold280169290.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Lusiscaffold2860179360.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold2910183550.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Lusiscaffold3020193450.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold3030195090.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold310202440.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Lusiscaffold3110206380.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Lusiscaffold3190211690.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Lusiscaffold320212040.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold3250213580.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Lusiscaffold330217360.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Lusiscaffold340224410.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold340226360.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold3440227750.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Lusiscaffold34940232430.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Lusiscaffold3530234670.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Lusiscaffold370243040.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold400256230.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold4130257850.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Lusiscaffold4160260820.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Lusiscaffold4180263370.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold4300273520.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold440275860.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Lusiscaffold4650290290.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Lusiscaffold4650290300.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |