PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
Lusiscaffold10370007750.1 Alkaloid NCS medium borderline
Lusiscaffold1200030970.1 Alkaloid NCS low borderline
Lusiscaffold1210032090.1 Alkaloid NCS medium borderline
Lusiscaffold13130049040.1 Alkaloid NCS medium borderline
Lusiscaffold1320050950.1 Alkaloid NCS medium borderline
Lusiscaffold1450061330.1 Alkaloid NCS medium borderline
Lusiscaffold1510070610.1 Alkaloid NCS medium borderline
Lusiscaffold15580076990.1 Alkaloid NCS medium borderline
Lusiscaffold16490091030.1 Alkaloid NCS low borderline
Lusiscaffold1650091540.1 Alkaloid NCS medium borderline
Lusiscaffold250142680.1 Alkaloid NCS medium borderline
Lusiscaffold250142940.1 Alkaloid NCS medium borderline
Lusiscaffold2510147800.1 Alkaloid NCS medium borderline
Lusiscaffold2610153180.1 Alkaloid NCS medium borderline
Lusiscaffold2610153250.1 Alkaloid NCS medium borderline
Lusiscaffold2610153790.1 Alkaloid NCS medium borderline
Lusiscaffold2610154380.1 Alkaloid NCS medium borderline
Lusiscaffold290181020.1 Alkaloid NCS medium borderline
Lusiscaffold3190211030.1 Alkaloid NCS low borderline
Lusiscaffold3460229640.1 Alkaloid NCS medium borderline
Lusiscaffold3610240680.1 Alkaloid NCS medium borderline
Lusiscaffold4130257240.1 Alkaloid NCS low borderline
Lusiscaffold4160261560.1 Alkaloid NCS medium borderline
Lusiscaffold4340274310.1 Alkaloid NCS medium borderline
Lusiscaffold4620285830.1 Alkaloid NCS medium pass
Lusiscaffold7510372480.1 Alkaloid NCS medium borderline
Lusiscaffold760375810.1 Alkaloid NCS medium borderline
Lusiscaffold820389470.1 Alkaloid NCS medium borderline
Lusiscaffold860395430.1 Alkaloid NCS medium pass
Lusiscaffold860395490.1 Alkaloid NCS medium borderline
Lusiscaffold8630402470.1 Alkaloid NCS medium borderline
Lusiscaffold8660404300.1 Alkaloid NCS medium borderline
Lusiscaffold9170420180.1 Alkaloid NCS medium borderline