PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
Lusiscaffold1030006430.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1030006440.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold10350006680.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold10720012520.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold110015030.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold11430021620.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold11700026920.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold11700026940.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold11700026950.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold120029850.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold12160033370.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1220034550.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1230040410.1 Alkaloid CODM/T6ODM low borderline
Lusiscaffold1230040500.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1330051600.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1400057220.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1400057940.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1550074980.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1550075010.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold16300088220.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold16990094040.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1770098390.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1770098400.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold18210102950.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1960111360.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1960111560.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold19820111820.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold1990112510.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold20030114950.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold20112950.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold20112960.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold20220116530.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2040117230.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2160123730.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2160123870.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2170125010.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2220129560.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2220129580.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130580.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130590.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130600.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130610.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130630.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250130650.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2250131600.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2310135910.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold250142670.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2520149010.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold25930151960.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold2670155860.1 Alkaloid CODM/T6ODM medium borderline