PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Lusiscaffold10350006690.1 Alkaloid PMT low borderline
Lusiscaffold10680010720.1 Alkaloid PMT medium borderline
Lusiscaffold1200031120.1 Alkaloid PMT low borderline
Lusiscaffold12860045310.1 Alkaloid PMT low borderline
Lusiscaffold1400057740.1 Alkaloid PMT medium pass
Lusiscaffold1450060360.1 Alkaloid PMT medium pass
Lusiscaffold1560078800.1 Alkaloid PMT medium borderline
Lusiscaffold1630087030.1 Alkaloid PMT medium borderline
Lusiscaffold250144570.1 Alkaloid PMT low borderline
Lusiscaffold2570150290.1 Alkaloid PMT medium borderline
Lusiscaffold2920185710.1 Alkaloid PMT low borderline
Lusiscaffold30300195450.1 Alkaloid PMT low borderline
Lusiscaffold30420195670.1 Alkaloid PMT medium pass
Lusiscaffold3190211490.1 Alkaloid PMT low borderline
Lusiscaffold330218330.1 Alkaloid PMT low borderline
Lusiscaffold330219200.1 Alkaloid PMT medium borderline
Lusiscaffold3730247590.1 Alkaloid PMT medium borderline
Lusiscaffold3760250240.1 Alkaloid PMT medium borderline
Lusiscaffold3800254120.1 Alkaloid PMT medium pass
Lusiscaffold4060256570.1 Alkaloid PMT medium pass
Lusiscaffold420265630.1 Alkaloid PMT medium pass
Lusiscaffold420265640.1 Alkaloid PMT low borderline
Lusiscaffold430271630.1 Alkaloid PMT medium pass
Lusiscaffold430271640.1 Alkaloid PMT medium pass
Lusiscaffold4620284560.1 Alkaloid PMT low borderline
Lusiscaffold4880302480.1 Alkaloid PMT medium pass
Lusiscaffold6410346490.1 Alkaloid PMT medium pass
Lusiscaffold6800357540.1 Alkaloid PMT medium pass
Lusiscaffold7510371750.1 Alkaloid PMT medium borderline
Lusiscaffold7970384850.1 Alkaloid PMT low borderline
Lusiscaffold8470393800.1 Alkaloid PMT low borderline
Lusiscaffold8580394370.1 Alkaloid PMT medium pass
Lusiscaffold9170420800.1 Alkaloid PMT medium borderline