PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold16030085640.1 Terpenoid AACT medium borderline
Lusiscaffold2220128910.1 Terpenoid AACT low borderline
Lusiscaffold2600152350.1 Terpenoid AACT low borderline
Lusiscaffold2800173140.1 Terpenoid AACT low borderline
Lusiscaffold340222240.1 Terpenoid AACT medium borderline
Lusiscaffold340225840.1 Terpenoid AACT medium borderline
Lusiscaffold3980255760.1 Terpenoid AACT low borderline
Lusiscaffold5050306500.1 Terpenoid AACT medium borderline
Lusiscaffold5680320780.1 Terpenoid AACT medium borderline
Lusiscaffold5720324880.1 Terpenoid AACT low borderline
Lusiscaffold7540373180.1 Terpenoid AACT medium borderline
Lusiscaffold80385510.1 Terpenoid AACT medium borderline
LusiC82988890000690.1 Terpenoid BAHD medium pass
LusiC82989430000700.1 Terpenoid BAHD medium pass
LusiC83544510001290.1 Terpenoid BAHD low borderline
LusiC83579450001430.1 Terpenoid BAHD medium pass
LusiC83580910001440.1 Terpenoid BAHD low borderline
Lusiscaffold1030005260.1 Terpenoid BAHD medium pass
Lusiscaffold1030006180.1 Terpenoid BAHD low borderline
Lusiscaffold10350006690.1 Terpenoid BAHD low borderline
Lusiscaffold10350007280.1 Terpenoid BAHD medium pass
Lusiscaffold10370008100.1 Terpenoid BAHD medium pass
Lusiscaffold10720012270.1 Terpenoid BAHD medium pass
Lusiscaffold10720012350.1 Terpenoid BAHD medium pass
Lusiscaffold10990014470.1 Terpenoid BAHD medium pass
Lusiscaffold11200017210.1 Terpenoid BAHD medium pass
Lusiscaffold11400020330.1 Terpenoid BAHD medium pass
Lusiscaffold11430020890.1 Terpenoid BAHD low borderline
Lusiscaffold11430021330.1 Terpenoid BAHD medium pass
Lusiscaffold11430021340.1 Terpenoid BAHD medium pass
Lusiscaffold11430022420.1 Terpenoid BAHD medium pass
Lusiscaffold11550023290.1 Terpenoid BAHD medium pass
Lusiscaffold1160024220.1 Terpenoid BAHD medium pass
Lusiscaffold11680025610.1 Terpenoid BAHD medium pass
Lusiscaffold11860027740.1 Terpenoid BAHD medium pass
Lusiscaffold11990029160.1 Terpenoid BAHD medium pass
Lusiscaffold11990029170.1 Terpenoid BAHD medium pass
Lusiscaffold1200031120.1 Terpenoid BAHD medium pass
Lusiscaffold12160032820.1 Terpenoid BAHD low borderline
Lusiscaffold12160032840.1 Terpenoid BAHD low borderline
Lusiscaffold12160032850.1 Terpenoid BAHD low borderline
Lusiscaffold12160033430.1 Terpenoid BAHD medium pass
Lusiscaffold1230038440.1 Terpenoid BAHD low borderline
Lusiscaffold1230038910.1 Terpenoid BAHD low borderline
Lusiscaffold1230039130.1 Terpenoid BAHD medium pass
Lusiscaffold1230039900.1 Terpenoid BAHD medium pass
Lusiscaffold12470041480.1 Terpenoid BAHD medium pass
Lusiscaffold12530042900.1 Terpenoid BAHD low borderline
Lusiscaffold12530042930.1 Terpenoid BAHD low borderline
Lusiscaffold12860045300.1 Terpenoid BAHD low borderline