PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status
Lusiscaffold1030005920.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold13110047610.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold1590083180.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold160083740.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold250146250.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold2720161740.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold2750165010.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold2800174590.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3190210160.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3190210170.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold3460229140.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold350232650.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold3760249550.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3910255640.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold4130257550.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold570322440.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold7510372390.1 Steroid ROT3/CYP90C1 medium borderline