PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Lusiscaffold1010003890.1 Alkaloid T16H medium borderline
Lusiscaffold10860013730.1 Alkaloid T16H medium borderline
Lusiscaffold11060015490.1 Alkaloid T16H medium borderline
Lusiscaffold11580023790.1 Alkaloid T16H medium borderline
Lusiscaffold1210032270.1 Alkaloid T16H medium borderline
Lusiscaffold1210032280.1 Alkaloid T16H medium borderline
Lusiscaffold1270044820.1 Alkaloid T16H medium borderline
Lusiscaffold13470052750.1 Alkaloid T16H low borderline
Lusiscaffold14910064960.1 Alkaloid T16H medium borderline
Lusiscaffold1550076360.1 Alkaloid T16H medium borderline
Lusiscaffold1550076570.1 Alkaloid T16H medium borderline
Lusiscaffold1560077560.1 Alkaloid T16H medium borderline
Lusiscaffold1560080990.1 Alkaloid T16H medium borderline
Lusiscaffold1630087060.1 Alkaloid T16H medium pass
Lusiscaffold20113080.1 Alkaloid T16H medium borderline
Lusiscaffold2080119950.1 Alkaloid T16H medium borderline
Lusiscaffold2170125320.1 Alkaloid T16H medium borderline
Lusiscaffold250145760.1 Alkaloid T16H medium borderline
Lusiscaffold250145790.1 Alkaloid T16H medium borderline
Lusiscaffold2510147580.1 Alkaloid T16H medium borderline
Lusiscaffold2510147590.1 Alkaloid T16H medium borderline
Lusiscaffold2610153090.1 Alkaloid T16H medium borderline
Lusiscaffold2720160230.1 Alkaloid T16H medium borderline
Lusiscaffold2920186470.1 Alkaloid T16H medium borderline
Lusiscaffold3100205530.1 Alkaloid T16H medium borderline
Lusiscaffold3270215050.1 Alkaloid T16H low borderline
Lusiscaffold3460229400.1 Alkaloid T16H medium borderline
Lusiscaffold3490230750.1 Alkaloid T16H medium borderline
Lusiscaffold3530234220.1 Alkaloid T16H medium borderline
Lusiscaffold4060256470.1 Alkaloid T16H medium borderline
Lusiscaffold430269850.1 Alkaloid T16H medium borderline
Lusiscaffold430271700.1 Alkaloid T16H medium borderline
Lusiscaffold4610281650.1 Alkaloid T16H medium borderline
Lusiscaffold4640287690.1 Alkaloid T16H medium borderline
Lusiscaffold6050335510.1 Alkaloid T16H medium borderline
Lusiscaffold670355700.1 Alkaloid T16H low borderline
Lusiscaffold6740357070.1 Alkaloid T16H low borderline
Lusiscaffold6890360000.1 Alkaloid T16H low borderline
Lusiscaffold7010361630.1 Alkaloid T16H medium borderline
Lusiscaffold7090364270.1 Alkaloid T16H medium borderline
Lusiscaffold7310367710.1 Alkaloid T16H medium borderline
Lusiscaffold7650378270.1 Alkaloid T16H medium borderline
Lusiscaffold860397900.1 Alkaloid T16H medium borderline
Lusiscaffold90410700.1 Alkaloid T16H medium borderline
Lusiscaffold90410730.1 Alkaloid T16H medium borderline
Lusiscaffold9060415070.1 Alkaloid T16H medium borderline
Lusiscaffold9060415120.1 Alkaloid T16H medium borderline
Lusiscaffold940424380.1 Alkaloid T16H medium borderline
Lusiscaffold960425890.1 Alkaloid T16H medium borderline
Lusiscaffold960426190.1 Alkaloid T16H medium borderline