PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Lusiscaffold100002770.1 Alkaloid T3O medium borderline
Lusiscaffold1030005250.1 Alkaloid T3O low borderline
Lusiscaffold10360007620.1 Alkaloid T3O medium borderline
Lusiscaffold10360007640.1 Alkaloid T3O medium borderline
Lusiscaffold10720012250.1 Alkaloid T3O medium borderline
Lusiscaffold11340019120.1 Alkaloid T3O medium borderline
Lusiscaffold11340019240.1 Alkaloid T3O medium borderline
Lusiscaffold11400020460.1 Alkaloid T3O low borderline
Lusiscaffold11430021530.1 Alkaloid T3O medium borderline
Lusiscaffold120030650.1 Alkaloid T3O medium pass
Lusiscaffold1230035080.1 Alkaloid T3O medium borderline
Lusiscaffold1230039760.1 Alkaloid T3O medium borderline
Lusiscaffold12470041290.1 Alkaloid T3O low borderline
Lusiscaffold1270044690.1 Alkaloid T3O medium borderline
Lusiscaffold13110047610.1 Alkaloid T3O medium pass
Lusiscaffold13130048710.1 Alkaloid T3O medium borderline
Lusiscaffold1320050740.1 Alkaloid T3O medium pass
Lusiscaffold13310051910.1 Alkaloid T3O medium borderline
Lusiscaffold13470052760.1 Alkaloid T3O medium borderline
Lusiscaffold14860063050.1 Alkaloid T3O medium borderline
Lusiscaffold14860063060.1 Alkaloid T3O medium borderline
Lusiscaffold14860063230.1 Alkaloid T3O medium borderline
Lusiscaffold14860063240.1 Alkaloid T3O medium borderline
Lusiscaffold14860063260.1 Alkaloid T3O medium borderline
Lusiscaffold1510070170.1 Alkaloid T3O low borderline
Lusiscaffold1560080160.1 Alkaloid T3O medium pass
Lusiscaffold15780082600.1 Alkaloid T3O medium borderline
Lusiscaffold1590083180.1 Alkaloid T3O medium pass
Lusiscaffold1590083410.1 Alkaloid T3O medium borderline
Lusiscaffold160083740.1 Alkaloid T3O medium pass
Lusiscaffold160084170.1 Alkaloid T3O medium borderline
Lusiscaffold160084330.1 Alkaloid T3O medium borderline
Lusiscaffold1630087050.1 Alkaloid T3O low borderline
Lusiscaffold1630087070.1 Alkaloid T3O medium borderline
Lusiscaffold1670092140.1 Alkaloid T3O medium pass
Lusiscaffold1720095460.1 Alkaloid T3O medium pass
Lusiscaffold1770098160.1 Alkaloid T3O medium borderline
Lusiscaffold1840103630.1 Alkaloid T3O low borderline
Lusiscaffold1840104450.1 Alkaloid T3O medium pass
Lusiscaffold2000114310.1 Alkaloid T3O medium borderline
Lusiscaffold2000114370.1 Alkaloid T3O medium borderline
Lusiscaffold20113240.1 Alkaloid T3O medium borderline
Lusiscaffold2080119440.1 Alkaloid T3O medium borderline
Lusiscaffold2090120950.1 Alkaloid T3O medium borderline
Lusiscaffold2120122820.1 Alkaloid T3O medium borderline
Lusiscaffold2170125050.1 Alkaloid T3O medium borderline
Lusiscaffold2170127200.1 Alkaloid T3O medium pass
Lusiscaffold2220129330.1 Alkaloid T3O low borderline
Lusiscaffold2220129340.1 Alkaloid T3O medium pass
Lusiscaffold2250131450.1 Alkaloid T3O low borderline