PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
LusiC83571610001400.1 Alkaloid GS high pass
Lusiscaffold10420008870.1 Alkaloid GS low borderline
Lusiscaffold10750012640.1 Alkaloid GS low borderline
Lusiscaffold11430022190.1 Alkaloid GS high pass
Lusiscaffold1170026750.1 Alkaloid GS high pass
Lusiscaffold12470041770.1 Alkaloid GS high pass
Lusiscaffold13760054940.1 Alkaloid GS low borderline
Lusiscaffold14910064490.1 Alkaloid GS high pass
Lusiscaffold150067130.1 Alkaloid GS medium pass
Lusiscaffold17210095700.1 Alkaloid GS high pass
Lusiscaffold17210096080.1 Alkaloid GS low borderline
Lusiscaffold2420140360.1 Alkaloid GS low borderline
Lusiscaffold2510148580.1 Alkaloid GS low borderline
Lusiscaffold280168750.1 Alkaloid GS low borderline
Lusiscaffold280168760.1 Alkaloid GS low borderline
Lusiscaffold280172060.1 Alkaloid GS high pass
Lusiscaffold3490232200.1 Alkaloid GS low borderline
Lusiscaffold3580236450.1 Alkaloid GS low borderline
Lusiscaffold3580236460.1 Alkaloid GS medium pass
Lusiscaffold3730247710.1 Alkaloid GS low borderline
Lusiscaffold3760248430.1 Alkaloid GS low borderline
Lusiscaffold4540278540.1 Alkaloid GS low borderline
Lusiscaffold4900303140.1 Alkaloid GS medium pass
Lusiscaffold4900303150.1 Alkaloid GS low borderline
Lusiscaffold5110309620.1 Alkaloid GS high pass
Lusiscaffold550319010.1 Alkaloid GS medium pass
Lusiscaffold5750325640.1 Alkaloid GS high pass
Lusiscaffold5870327690.1 Alkaloid GS high pass
Lusiscaffold6050333530.1 Alkaloid GS high pass
Lusiscaffold6050335450.1 Alkaloid GS low borderline
Lusiscaffold6050335460.1 Alkaloid GS low borderline
Lusiscaffold7060363750.1 Alkaloid GS high pass
Lusiscaffold760374550.1 Alkaloid GS high pass
Lusiscaffold7830382090.1 Alkaloid GS medium pass
Lusiscaffold7830382100.1 Alkaloid GS medium pass
Lusiscaffold8100387850.1 Alkaloid GS high pass
Lusiscaffold8830406750.1 Alkaloid GS low borderline
Lusiscaffold9170420660.1 Alkaloid GS low borderline
Lusiscaffold960426010.1 Alkaloid GS medium pass
Lusiscaffold960426020.1 Alkaloid GS medium pass
Lusiscaffold980431310.1 Alkaloid GS high pass