PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Lusiscaffold100002770.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold10360007640.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold10720012250.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold11340019120.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1230040430.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1230040440.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold12470041290.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold12470041300.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold1450061900.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold14860063240.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold14860063260.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076340.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076360.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076570.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1560077560.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1560080160.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold160084170.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1720095460.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold1840104450.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2000114370.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold20113240.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold20220116550.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2080119440.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2170127200.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2220129330.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2220129340.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2250131670.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2310136320.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2390138890.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold250145780.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold250145800.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold250145810.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2670155800.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2720159420.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2720160230.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2720160470.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2720161170.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2790167300.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold280168720.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2840178290.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2840178330.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2860179200.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2910181860.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2910181880.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2910181890.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2910181900.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2920186250.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold2920186470.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2940187930.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold300192220.1 Steroid DWF4/CYP90B1 low borderline