PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
LusiC82357050000380.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold1030005920.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold11580023800.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold1270044700.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold1560077570.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold2840178340.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold2910181850.1 Alkaloid G8O/G8H low borderline
Lusiscaffold2910181920.1 Alkaloid G8O/G8H low borderline
Lusiscaffold2910183140.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3250214120.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3250214130.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3460228800.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3490230670.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3490230800.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold3760249470.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold420265700.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold4610281630.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold4610281700.1 Alkaloid G8O/G8H low borderline
Lusiscaffold4640289780.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold4680290660.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold4730293980.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold5150310550.1 Alkaloid G8O/G8H medium pass
Lusiscaffold5400315240.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold570324020.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6300344060.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6410346700.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6410346760.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold670356590.1 Alkaloid G8O/G8H low borderline
Lusiscaffold6740357060.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7010361210.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7110364630.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7510372460.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold80385010.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold80386370.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9060415100.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9170419810.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9770428650.1 Alkaloid G8O/G8H medium borderline