PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX1/CYP85A1
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Gene Pathway Family Confidence Status
Lusiscaffold1210032270.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold1210032280.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold14780062720.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold2310136970.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold240139040.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold2510147580.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold27390164020.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold28570178610.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold3060198530.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold3760249470.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold4160260940.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold4610281710.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold4620284630.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold4640288190.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold4730293960.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold4880301190.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold5000305430.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold5400314930.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold5400315550.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold570324450.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold570324460.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold6410346770.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold660350480.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold7510372460.1 Steroid BR6OX1/CYP85A1 low borderline
Lusiscaffold820390090.1 Steroid BR6OX1/CYP85A1 medium borderline
Lusiscaffold9060415630.1 Steroid BR6OX1/CYP85A1 medium borderline