PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
Reset
Gene Pathway Family Confidence Status
Lusiscaffold1010004060.1 Alkaloid BBE medium borderline
Lusiscaffold1120016120.1 Alkaloid BBE medium borderline
Lusiscaffold11230017910.1 Alkaloid BBE medium borderline
Lusiscaffold1230039390.1 Alkaloid BBE medium borderline
Lusiscaffold1230039400.1 Alkaloid BBE medium borderline
Lusiscaffold12490042340.1 Alkaloid BBE low borderline
Lusiscaffold13240051410.1 Alkaloid BBE medium borderline
Lusiscaffold150067700.1 Alkaloid BBE medium borderline
Lusiscaffold1510071930.1 Alkaloid BBE medium borderline
Lusiscaffold1690093490.1 Alkaloid BBE medium borderline
Lusiscaffold2610154640.1 Alkaloid BBE medium borderline
Lusiscaffold2800176100.1 Alkaloid BBE medium borderline
Lusiscaffold280171060.1 Alkaloid BBE medium borderline
Lusiscaffold280171070.1 Alkaloid BBE medium borderline
Lusiscaffold280171090.1 Alkaloid BBE medium borderline
Lusiscaffold280171100.1 Alkaloid BBE medium borderline
Lusiscaffold280171120.1 Alkaloid BBE medium borderline
Lusiscaffold280171150.1 Alkaloid BBE medium borderline
Lusiscaffold280171160.1 Alkaloid BBE medium borderline
Lusiscaffold2960188930.1 Alkaloid BBE medium borderline
Lusiscaffold3610240420.1 Alkaloid BBE medium borderline
Lusiscaffold370243130.1 Alkaloid BBE low borderline
Lusiscaffold4720291430.1 Alkaloid BBE low borderline
Lusiscaffold510308070.1 Alkaloid BBE medium borderline
Lusiscaffold5960330940.1 Alkaloid BBE medium borderline
Lusiscaffold5960330950.1 Alkaloid BBE medium borderline
Lusiscaffold610335970.1 Alkaloid BBE medium borderline
Lusiscaffold610335990.1 Alkaloid BBE medium borderline
Lusiscaffold7010361150.1 Alkaloid BBE medium borderline
Lusiscaffold7110364720.1 Alkaloid BBE medium borderline
Lusiscaffold7340368780.1 Alkaloid BBE medium borderline
Lusiscaffold760376460.1 Alkaloid BBE medium borderline
Lusiscaffold8830406660.1 Alkaloid BBE medium borderline
Lusiscaffold8980409350.1 Alkaloid BBE medium borderline
Lusiscaffold980432240.1 Alkaloid BBE medium borderline
Lusiscaffold980432260.1 Alkaloid BBE medium borderline
Lusiscaffold980432280.1 Alkaloid BBE medium borderline
Lusiscaffold980432290.1 Alkaloid BBE medium borderline
Lusiscaffold980432300.1 Alkaloid BBE medium borderline
Lusiscaffold980432310.1 Alkaloid BBE medium borderline
Lusiscaffold980432320.1 Alkaloid BBE medium borderline
Lusiscaffold980432360.1 Alkaloid BBE medium borderline
Lusiscaffold980432370.1 Alkaloid BBE medium borderline
Lusiscaffold980432380.1 Alkaloid BBE medium borderline
Lusiscaffold980432390.1 Alkaloid BBE medium borderline