PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
LusiC82357050000380.1 Flavonoid FNS medium borderline
Lusiscaffold1030005920.1 Flavonoid FNS medium borderline
Lusiscaffold11060015490.1 Flavonoid FNS medium borderline
Lusiscaffold11580023800.1 Flavonoid FNS medium borderline
Lusiscaffold120030650.1 Flavonoid FNS medium borderline
Lusiscaffold1270044700.1 Flavonoid FNS medium borderline
Lusiscaffold13110047610.1 Flavonoid FNS medium borderline
Lusiscaffold13130048100.1 Flavonoid FNS low borderline
Lusiscaffold13560053580.1 Flavonoid FNS low borderline
Lusiscaffold2090120950.1 Flavonoid FNS medium borderline
Lusiscaffold2170125320.1 Flavonoid FNS medium borderline
Lusiscaffold2310136970.1 Flavonoid FNS medium borderline
Lusiscaffold250145790.1 Flavonoid FNS medium borderline
Lusiscaffold28570178610.1 Flavonoid FNS medium borderline
Lusiscaffold3100204810.1 Flavonoid FNS medium borderline
Lusiscaffold3460228800.1 Flavonoid FNS medium borderline
Lusiscaffold4610281650.1 Flavonoid FNS medium borderline
Lusiscaffold4610281710.1 Flavonoid FNS medium borderline
Lusiscaffold4680290660.1 Flavonoid FNS medium borderline
Lusiscaffold4730293960.1 Flavonoid FNS medium borderline
Lusiscaffold5110309420.1 Flavonoid FNS medium borderline
Lusiscaffold6300343070.1 Flavonoid FNS low borderline
Lusiscaffold7090364270.1 Flavonoid FNS medium borderline
Lusiscaffold7310367710.1 Flavonoid FNS medium borderline
Lusiscaffold7340368820.1 Flavonoid FNS medium borderline
Lusiscaffold7830382770.1 Flavonoid FNS medium borderline
Lusiscaffold8660404150.1 Flavonoid FNS low borderline
Lusiscaffold9060415100.1 Flavonoid FNS medium borderline
Lusiscaffold9060415120.1 Flavonoid FNS medium borderline
Lusiscaffold9170419810.1 Flavonoid FNS medium borderline