PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
Lusiscaffold1090013830.1 Phenylpropanoid COMT medium pass
Lusiscaffold1160024100.1 Phenylpropanoid COMT low borderline
Lusiscaffold13080046360.1 Phenylpropanoid COMT low borderline
Lusiscaffold13080047380.1 Phenylpropanoid COMT medium pass
Lusiscaffold13080047390.1 Phenylpropanoid COMT medium pass
Lusiscaffold13470052720.1 Phenylpropanoid COMT medium pass
Lusiscaffold13470052730.1 Phenylpropanoid COMT low borderline
Lusiscaffold13470052740.1 Phenylpropanoid COMT medium pass
Lusiscaffold1410059210.1 Phenylpropanoid COMT medium pass
Lusiscaffold150068320.1 Phenylpropanoid COMT low borderline
Lusiscaffold150069520.1 Phenylpropanoid COMT low borderline
Lusiscaffold1760097520.1 Phenylpropanoid COMT medium pass
Lusiscaffold1770098810.1 Phenylpropanoid COMT medium pass
Lusiscaffold1770099750.1 Phenylpropanoid COMT medium pass
Lusiscaffold1770099760.1 Phenylpropanoid COMT medium pass
Lusiscaffold1840104200.1 Phenylpropanoid COMT medium pass
Lusiscaffold21030122150.1 Phenylpropanoid COMT low borderline
Lusiscaffold2170125030.1 Phenylpropanoid COMT medium pass
Lusiscaffold2170125040.1 Phenylpropanoid COMT medium pass
Lusiscaffold2330137870.1 Phenylpropanoid COMT medium pass
Lusiscaffold2350138390.1 Phenylpropanoid COMT medium pass
Lusiscaffold280170010.1 Phenylpropanoid COMT medium pass
Lusiscaffold2910182790.1 Phenylpropanoid COMT medium pass
Lusiscaffold29320187230.1 Phenylpropanoid COMT medium pass
Lusiscaffold29320187240.1 Phenylpropanoid COMT low borderline
Lusiscaffold29740190520.1 Phenylpropanoid COMT medium pass
Lusiscaffold3050196220.1 Phenylpropanoid COMT medium pass
Lusiscaffold3050196230.1 Phenylpropanoid COMT medium pass
Lusiscaffold3700243620.1 Phenylpropanoid COMT medium pass
Lusiscaffold4610281990.1 Phenylpropanoid COMT low borderline
Lusiscaffold4730294110.1 Phenylpropanoid COMT low borderline
Lusiscaffold510307930.1 Phenylpropanoid COMT medium pass
Lusiscaffold5840326990.1 Phenylpropanoid COMT low borderline
Lusiscaffold7010362520.1 Phenylpropanoid COMT medium pass
Lusiscaffold7010362540.1 Phenylpropanoid COMT medium pass
Lusiscaffold7010362550.1 Phenylpropanoid COMT medium pass
Lusiscaffold760373810.1 Phenylpropanoid COMT low borderline
Lusiscaffold7650378210.1 Phenylpropanoid COMT low borderline
Lusiscaffold7650378250.1 Phenylpropanoid COMT medium pass
Lusiscaffold7650378290.1 Phenylpropanoid COMT medium pass
Lusiscaffold8200391000.1 Phenylpropanoid COMT medium pass
Lusiscaffold8210392020.1 Phenylpropanoid COMT low borderline
Lusiscaffold8350393120.1 Phenylpropanoid COMT low borderline
Lusiscaffold9240422220.1 Phenylpropanoid COMT medium pass
Lusiscaffold9810432880.1 Phenylpropanoid COMT medium pass