PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Lusiscaffold100002780.1 Alkaloid IO medium borderline
Lusiscaffold10360007590.1 Alkaloid IO low borderline
Lusiscaffold1120016530.1 Alkaloid IO low borderline
Lusiscaffold11430021510.1 Alkaloid IO medium borderline
Lusiscaffold1210032290.1 Alkaloid IO medium borderline
Lusiscaffold1230038760.1 Alkaloid IO medium pass
Lusiscaffold13310051890.1 Alkaloid IO medium borderline
Lusiscaffold1510070220.1 Alkaloid IO low borderline
Lusiscaffold1550075180.1 Alkaloid IO low borderline
Lusiscaffold1550076340.1 Alkaloid IO medium borderline
Lusiscaffold1550076350.1 Alkaloid IO medium borderline
Lusiscaffold220127840.1 Alkaloid IO low borderline
Lusiscaffold280168480.1 Alkaloid IO medium borderline
Lusiscaffold280168720.1 Alkaloid IO medium borderline
Lusiscaffold280168730.1 Alkaloid IO medium borderline
Lusiscaffold2910181900.1 Alkaloid IO medium borderline
Lusiscaffold2910181910.1 Alkaloid IO medium borderline
Lusiscaffold3250214110.1 Alkaloid IO medium borderline
Lusiscaffold3270215040.1 Alkaloid IO medium borderline
Lusiscaffold3490230740.1 Alkaloid IO medium borderline
Lusiscaffold350232650.1 Alkaloid IO low borderline
Lusiscaffold3580236560.1 Alkaloid IO medium borderline
Lusiscaffold3730245850.1 Alkaloid IO medium borderline
Lusiscaffold4160260940.1 Alkaloid IO medium borderline
Lusiscaffold4160261930.1 Alkaloid IO low borderline
Lusiscaffold4160261970.1 Alkaloid IO low borderline
Lusiscaffold4900303030.1 Alkaloid IO medium borderline
Lusiscaffold4900303040.1 Alkaloid IO medium borderline
Lusiscaffold6050333960.1 Alkaloid IO medium borderline
Lusiscaffold6050335480.1 Alkaloid IO medium borderline
Lusiscaffold6050335700.1 Alkaloid IO medium borderline
Lusiscaffold6410346710.1 Alkaloid IO medium borderline
Lusiscaffold6410346730.1 Alkaloid IO medium borderline
Lusiscaffold7220366570.1 Alkaloid IO medium pass
Lusiscaffold7400369940.1 Alkaloid IO medium borderline
Lusiscaffold7650378080.1 Alkaloid IO medium borderline
Lusiscaffold7830382760.1 Alkaloid IO high pass
Lusiscaffold7830384160.1 Alkaloid IO medium borderline
Lusiscaffold8980409860.1 Alkaloid IO medium pass
Lusiscaffold960426220.1 Alkaloid IO medium borderline
Lusiscaffold960426230.1 Alkaloid IO medium borderline
Lusiscaffold9770428590.1 Alkaloid IO medium pass
Lusiscaffold9770430090.1 Alkaloid IO medium borderline