PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Lusiscaffold11400020590.1 Flavonoid C4H medium borderline
Lusiscaffold1830103170.1 Flavonoid C4H medium borderline
Lusiscaffold2080119950.1 Flavonoid C4H medium borderline
Lusiscaffold2920186470.1 Flavonoid C4H medium borderline
Lusiscaffold300191540.1 Flavonoid C4H medium borderline
Lusiscaffold3100205530.1 Flavonoid C4H medium borderline
Lusiscaffold310200660.1 Flavonoid C4H medium borderline
Lusiscaffold310200700.1 Flavonoid C4H medium borderline
Lusiscaffold430269850.1 Flavonoid C4H medium borderline
Lusiscaffold820390110.1 Flavonoid C4H medium borderline
LusiC82357050000380.1 Rosmarinic Acid C4H medium pass
Lusiscaffold100002770.1 Rosmarinic Acid C4H low borderline
Lusiscaffold100002780.1 Rosmarinic Acid C4H low borderline
Lusiscaffold100002870.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1010003890.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1030005920.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007620.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007630.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007640.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10520009610.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10720012250.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10860013730.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11060015490.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11340019120.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11340019240.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11400020590.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11400020600.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1140020080.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11430021510.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11430021530.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11580023790.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1200031020.1 Rosmarinic Acid C4H low borderline
Lusiscaffold120030650.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032270.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032280.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032290.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1230035080.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1230039760.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1230040430.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1230040440.1 Rosmarinic Acid C4H low borderline
Lusiscaffold12470041290.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1270044690.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1270044700.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1270044820.1 Rosmarinic Acid C4H low borderline
Lusiscaffold13130048710.1 Rosmarinic Acid C4H low borderline
Lusiscaffold13310051910.1 Rosmarinic Acid C4H medium pass
Lusiscaffold13470052750.1 Rosmarinic Acid C4H low borderline
Lusiscaffold13470052760.1 Rosmarinic Acid C4H medium pass
Lusiscaffold14860063050.1 Rosmarinic Acid C4H medium pass
Lusiscaffold14860063060.1 Rosmarinic Acid C4H medium pass