PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Lusiscaffold100002820.1 Flavonoid UFGT low borderline
Lusiscaffold1020004650.1 Flavonoid UFGT medium pass
Lusiscaffold1030005720.1 Flavonoid UFGT low borderline
Lusiscaffold1030005850.1 Flavonoid UFGT low borderline
Lusiscaffold10720012530.1 Flavonoid UFGT high pass
Lusiscaffold10720012540.1 Flavonoid UFGT medium pass
Lusiscaffold10720012550.1 Flavonoid UFGT high pass
Lusiscaffold11200016980.1 Flavonoid UFGT medium pass
Lusiscaffold11200016990.1 Flavonoid UFGT high pass
Lusiscaffold11430020940.1 Flavonoid UFGT medium pass
Lusiscaffold11430022050.1 Flavonoid UFGT high pass
Lusiscaffold11430022170.1 Flavonoid UFGT medium pass
Lusiscaffold1170025910.1 Flavonoid UFGT medium pass
Lusiscaffold1170025930.1 Flavonoid UFGT low borderline
Lusiscaffold11860028260.1 Flavonoid UFGT medium pass
Lusiscaffold12180034370.1 Flavonoid UFGT medium pass
Lusiscaffold1230037980.1 Flavonoid UFGT medium pass
Lusiscaffold1230037990.1 Flavonoid UFGT high pass
Lusiscaffold1230038170.1 Flavonoid UFGT medium pass
Lusiscaffold1230038180.1 Flavonoid UFGT medium pass
Lusiscaffold1230038190.1 Flavonoid UFGT medium pass
Lusiscaffold1230038210.1 Flavonoid UFGT medium pass
Lusiscaffold12470041520.1 Flavonoid UFGT high pass
Lusiscaffold12470041530.1 Flavonoid UFGT high pass
Lusiscaffold12470041550.1 Flavonoid UFGT medium pass
Lusiscaffold12470041560.1 Flavonoid UFGT medium pass
Lusiscaffold12470041570.1 Flavonoid UFGT medium pass
Lusiscaffold12470041590.1 Flavonoid UFGT high pass
Lusiscaffold12470041780.1 Flavonoid UFGT medium pass
Lusiscaffold12530043660.1 Flavonoid UFGT medium pass
Lusiscaffold130045540.1 Flavonoid UFGT medium pass
Lusiscaffold1370054120.1 Flavonoid UFGT low borderline
Lusiscaffold1370054150.1 Flavonoid UFGT medium pass
Lusiscaffold1370054200.1 Flavonoid UFGT low borderline
Lusiscaffold14210059240.1 Flavonoid UFGT medium pass
Lusiscaffold14210059250.1 Flavonoid UFGT high pass
Lusiscaffold14210059260.1 Flavonoid UFGT high pass
Lusiscaffold14210059270.1 Flavonoid UFGT high pass
Lusiscaffold1450060260.1 Flavonoid UFGT medium pass
Lusiscaffold1450060280.1 Flavonoid UFGT low borderline
Lusiscaffold14860063430.1 Flavonoid UFGT medium pass
Lusiscaffold14860063440.1 Flavonoid UFGT medium pass
Lusiscaffold14910064460.1 Flavonoid UFGT high pass
Lusiscaffold14910064470.1 Flavonoid UFGT medium pass
Lusiscaffold14910064690.1 Flavonoid UFGT high pass
Lusiscaffold14910064700.1 Flavonoid UFGT medium pass
Lusiscaffold14910064710.1 Flavonoid UFGT medium pass
Lusiscaffold14910064730.1 Flavonoid UFGT medium pass
Lusiscaffold150066760.1 Flavonoid UFGT high pass
Lusiscaffold1560077640.1 Flavonoid UFGT high pass