PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status
Lusiscaffold10520009610.1 Alkaloid SLS medium borderline
Lusiscaffold10520009620.1 Alkaloid SLS low borderline
Lusiscaffold11400020590.1 Alkaloid SLS medium borderline
Lusiscaffold1230040430.1 Alkaloid SLS medium borderline
Lusiscaffold1230040440.1 Alkaloid SLS medium borderline
Lusiscaffold1830103170.1 Alkaloid SLS medium borderline
Lusiscaffold20220116550.1 Alkaloid SLS medium borderline
Lusiscaffold2030116760.1 Alkaloid SLS low borderline
Lusiscaffold2390138890.1 Alkaloid SLS medium borderline
Lusiscaffold2670155800.1 Alkaloid SLS medium borderline
Lusiscaffold2750165010.1 Alkaloid SLS low borderline
Lusiscaffold2940187930.1 Alkaloid SLS medium borderline
Lusiscaffold300192260.1 Alkaloid SLS medium pass
Lusiscaffold300192320.1 Alkaloid SLS medium borderline
Lusiscaffold3060197920.1 Alkaloid SLS medium borderline
Lusiscaffold310200720.1 Alkaloid SLS medium borderline
Lusiscaffold310201920.1 Alkaloid SLS medium borderline
Lusiscaffold330217380.1 Alkaloid SLS medium borderline
Lusiscaffold340223710.1 Alkaloid SLS medium borderline
Lusiscaffold340225150.1 Alkaloid SLS medium borderline
Lusiscaffold3630241420.1 Alkaloid SLS low borderline
Lusiscaffold5150310780.1 Alkaloid SLS medium borderline
Lusiscaffold6050334020.1 Alkaloid SLS medium borderline
Lusiscaffold6050334030.1 Alkaloid SLS medium borderline
Lusiscaffold6170340400.1 Alkaloid SLS medium borderline
Lusiscaffold7010361540.1 Alkaloid SLS medium borderline
Lusiscaffold7650377250.1 Alkaloid SLS medium borderline
Lusiscaffold8630402570.1 Alkaloid SLS medium borderline
Lusiscaffold8660404150.1 Alkaloid SLS medium borderline
Lusiscaffold8980408220.1 Alkaloid SLS medium borderline
Lusiscaffold8980408230.1 Alkaloid SLS medium borderline
Lusiscaffold960426720.1 Alkaloid SLS medium borderline