PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Lusiscaffold1030006430.1 Flavonoid F3H medium borderline
Lusiscaffold1030006440.1 Flavonoid F3H medium borderline
Lusiscaffold10350006680.1 Flavonoid F3H medium pass
Lusiscaffold10360007710.1 Flavonoid F3H low borderline
Lusiscaffold10360007730.1 Flavonoid F3H low borderline
Lusiscaffold1040008560.1 Flavonoid F3H low borderline
Lusiscaffold10440009140.1 Flavonoid F3H low borderline
Lusiscaffold10720012520.1 Flavonoid F3H medium borderline
Lusiscaffold110015010.1 Flavonoid F3H low borderline
Lusiscaffold110015020.1 Flavonoid F3H medium borderline
Lusiscaffold110015030.1 Flavonoid F3H low borderline
Lusiscaffold11430021620.1 Flavonoid F3H medium borderline
Lusiscaffold11700026920.1 Flavonoid F3H low borderline
Lusiscaffold11850027670.1 Flavonoid F3H medium borderline
Lusiscaffold120029850.1 Flavonoid F3H medium borderline
Lusiscaffold1210032090.1 Flavonoid F3H medium borderline
Lusiscaffold12160033370.1 Flavonoid F3H medium borderline
Lusiscaffold1230037120.1 Flavonoid F3H low borderline
Lusiscaffold12530043820.1 Flavonoid F3H low borderline
Lusiscaffold13130049040.1 Flavonoid F3H medium borderline
Lusiscaffold1320050950.1 Flavonoid F3H medium borderline
Lusiscaffold1330051600.1 Flavonoid F3H medium pass
Lusiscaffold1400057220.1 Flavonoid F3H medium borderline
Lusiscaffold1400057940.1 Flavonoid F3H medium borderline
Lusiscaffold1450061320.1 Flavonoid F3H medium borderline
Lusiscaffold1450061330.1 Flavonoid F3H medium borderline
Lusiscaffold1510070610.1 Flavonoid F3H medium borderline
Lusiscaffold1550074980.1 Flavonoid F3H medium borderline
Lusiscaffold1550075010.1 Flavonoid F3H medium borderline
Lusiscaffold1550075240.1 Flavonoid F3H low borderline
Lusiscaffold15580076990.1 Flavonoid F3H low borderline
Lusiscaffold15780082370.1 Flavonoid F3H medium borderline
Lusiscaffold16300088220.1 Flavonoid F3H medium borderline
Lusiscaffold1640090610.1 Flavonoid F3H medium borderline
Lusiscaffold1650091540.1 Flavonoid F3H medium borderline
Lusiscaffold1650091560.1 Flavonoid F3H low borderline
Lusiscaffold1690093730.1 Flavonoid F3H medium pass
Lusiscaffold16990094040.1 Flavonoid F3H medium borderline
Lusiscaffold1760097500.1 Flavonoid F3H medium borderline
Lusiscaffold1770098390.1 Flavonoid F3H medium borderline
Lusiscaffold1770098400.1 Flavonoid F3H medium borderline
Lusiscaffold1770098790.1 Flavonoid F3H medium borderline
Lusiscaffold18210102950.1 Flavonoid F3H medium borderline
Lusiscaffold1960111360.1 Flavonoid F3H medium borderline
Lusiscaffold1960111560.1 Flavonoid F3H medium pass
Lusiscaffold19820111820.1 Flavonoid F3H medium borderline
Lusiscaffold20030114940.1 Flavonoid F3H medium borderline
Lusiscaffold20030114950.1 Flavonoid F3H medium borderline
Lusiscaffold20030114960.1 Flavonoid F3H medium borderline
Lusiscaffold20112950.1 Flavonoid F3H medium borderline