PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Lusiscaffold14860063230.1 Rosmarinic Acid C4H medium pass
Lusiscaffold14860063240.1 Rosmarinic Acid C4H medium pass
Lusiscaffold14860063260.1 Rosmarinic Acid C4H low borderline
Lusiscaffold14910064960.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1550076340.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1550076350.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1550076360.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1550076570.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1560077560.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1560080990.1 Rosmarinic Acid C4H low borderline
Lusiscaffold15780082600.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1590083410.1 Rosmarinic Acid C4H low borderline
Lusiscaffold160083740.1 Rosmarinic Acid C4H low borderline
Lusiscaffold160084170.1 Rosmarinic Acid C4H low borderline
Lusiscaffold160084330.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1630087070.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1670092140.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1720095460.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1770098160.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1830103170.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1840104450.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2000114310.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2000114370.1 Rosmarinic Acid C4H low borderline
Lusiscaffold20113080.1 Rosmarinic Acid C4H medium pass
Lusiscaffold20113240.1 Rosmarinic Acid C4H medium pass
Lusiscaffold20220116550.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2080119440.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2080119950.1 Rosmarinic Acid C4H medium pass
Lusiscaffold2090120950.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2120122820.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2120123110.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2120123150.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2170125050.1 Rosmarinic Acid C4H medium pass
Lusiscaffold2170125320.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2170127200.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2250131660.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2250131710.1 Rosmarinic Acid C4H medium pass
Lusiscaffold23030135890.1 Rosmarinic Acid C4H medium pass
Lusiscaffold2310136970.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2390138680.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2390138700.1 Rosmarinic Acid C4H low borderline
Lusiscaffold2390138890.1 Rosmarinic Acid C4H low borderline
Lusiscaffold240139040.1 Rosmarinic Acid C4H medium pass
Lusiscaffold240139120.1 Rosmarinic Acid C4H low borderline
Lusiscaffold250145760.1 Rosmarinic Acid C4H medium pass
Lusiscaffold250145780.1 Rosmarinic Acid C4H low borderline
Lusiscaffold250145790.1 Rosmarinic Acid C4H low borderline
Lusiscaffold250145800.1 Rosmarinic Acid C4H medium pass
Lusiscaffold250145810.1 Rosmarinic Acid C4H low borderline
Lusiscaffold250146250.1 Rosmarinic Acid C4H low borderline