PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Lusiscaffold100002870.1 Steroid CYP90D1 low borderline
Lusiscaffold10360007590.1 Steroid CYP90D1 medium borderline
Lusiscaffold10520009620.1 Steroid CYP90D1 low borderline
Lusiscaffold11430021530.1 Steroid CYP90D1 low borderline
Lusiscaffold11580023790.1 Steroid CYP90D1 low borderline
Lusiscaffold1200031020.1 Steroid CYP90D1 low borderline
Lusiscaffold1230035080.1 Steroid CYP90D1 low borderline
Lusiscaffold14860063050.1 Steroid CYP90D1 low borderline
Lusiscaffold14860063060.1 Steroid CYP90D1 low borderline
Lusiscaffold14860063230.1 Steroid CYP90D1 medium borderline
Lusiscaffold14910064960.1 Steroid CYP90D1 medium borderline
Lusiscaffold1550076350.1 Steroid CYP90D1 low borderline
Lusiscaffold1560080990.1 Steroid CYP90D1 low borderline
Lusiscaffold160084330.1 Steroid CYP90D1 low borderline
Lusiscaffold1670092140.1 Steroid CYP90D1 medium borderline
Lusiscaffold2120123110.1 Steroid CYP90D1 low borderline
Lusiscaffold2120123150.1 Steroid CYP90D1 low borderline
Lusiscaffold2250131660.1 Steroid CYP90D1 medium borderline
Lusiscaffold250146300.1 Steroid CYP90D1 low borderline
Lusiscaffold2720161180.1 Steroid CYP90D1 medium borderline
Lusiscaffold280168700.1 Steroid CYP90D1 low borderline
Lusiscaffold280168730.1 Steroid CYP90D1 low borderline
Lusiscaffold300192010.1 Steroid CYP90D1 low borderline
Lusiscaffold300192030.1 Steroid CYP90D1 low borderline
Lusiscaffold3060197920.1 Steroid CYP90D1 low borderline
Lusiscaffold3100205010.1 Steroid CYP90D1 low borderline
Lusiscaffold3190211100.1 Steroid CYP90D1 low borderline
Lusiscaffold3190211110.1 Steroid CYP90D1 low borderline
Lusiscaffold3270215040.1 Steroid CYP90D1 low borderline
Lusiscaffold3270215110.1 Steroid CYP90D1 low borderline
Lusiscaffold3270216890.1 Steroid CYP90D1 medium borderline
Lusiscaffold3530233600.1 Steroid CYP90D1 medium borderline
Lusiscaffold3590236970.1 Steroid CYP90D1 low borderline
Lusiscaffold430272080.1 Steroid CYP90D1 low borderline
Lusiscaffold4640286360.1 Steroid CYP90D1 low borderline
Lusiscaffold4900303030.1 Steroid CYP90D1 low borderline
Lusiscaffold5240312120.1 Steroid CYP90D1 low borderline
Lusiscaffold5400315390.1 Steroid CYP90D1 low borderline
Lusiscaffold6050333960.1 Steroid CYP90D1 low borderline
Lusiscaffold6050335490.1 Steroid CYP90D1 low borderline
Lusiscaffold6050335510.1 Steroid CYP90D1 low borderline
Lusiscaffold610336120.1 Steroid CYP90D1 low borderline
Lusiscaffold6410346970.1 Steroid CYP90D1 medium borderline
Lusiscaffold670355520.1 Steroid CYP90D1 low borderline
Lusiscaffold7340368820.1 Steroid CYP90D1 medium borderline
Lusiscaffold80385010.1 Steroid CYP90D1 low borderline
Lusiscaffold820390140.1 Steroid CYP90D1 low borderline
Lusiscaffold860396300.1 Steroid CYP90D1 medium borderline
Lusiscaffold8630402570.1 Steroid CYP90D1 low borderline
Lusiscaffold8660404150.1 Steroid CYP90D1 low borderline