PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Lusiscaffold670353780.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold670355250.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold670355700.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold6740357060.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold6870358210.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7010361540.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7110364640.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold760374060.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold760375780.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7650377250.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7650378270.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7830382240.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold7830384160.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold820390070.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold860397900.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold8980408220.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold8980408230.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold90410700.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold90410730.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold9060415090.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold9060415110.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold9060415130.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold960425890.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426170.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426220.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426720.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold970427840.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold9770430090.1 Steroid DWF4/CYP90B1 medium borderline