PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Lusiscaffold20220116530.1 Flavonoid F3H medium borderline
Lusiscaffold2040117230.1 Flavonoid F3H medium borderline
Lusiscaffold20570118460.1 Flavonoid F3H medium pass
Lusiscaffold2160123730.1 Flavonoid F3H medium borderline
Lusiscaffold2160123870.1 Flavonoid F3H low borderline
Lusiscaffold2170125010.1 Flavonoid F3H medium borderline
Lusiscaffold21740127330.1 Flavonoid F3H medium borderline
Lusiscaffold2220129560.1 Flavonoid F3H low borderline
Lusiscaffold2220129580.1 Flavonoid F3H medium borderline
Lusiscaffold2220129590.1 Flavonoid F3H low borderline
Lusiscaffold2220129600.1 Flavonoid F3H medium borderline
Lusiscaffold2250130570.1 Flavonoid F3H medium borderline
Lusiscaffold2250130580.1 Flavonoid F3H medium borderline
Lusiscaffold2250130590.1 Flavonoid F3H medium borderline
Lusiscaffold2250130600.1 Flavonoid F3H medium pass
Lusiscaffold2250130630.1 Flavonoid F3H medium borderline
Lusiscaffold2250130640.1 Flavonoid F3H medium borderline
Lusiscaffold2250130650.1 Flavonoid F3H medium borderline
Lusiscaffold2250131600.1 Flavonoid F3H medium borderline
Lusiscaffold2310135910.1 Flavonoid F3H medium borderline
Lusiscaffold2330137840.1 Flavonoid F3H medium borderline
Lusiscaffold250142670.1 Flavonoid F3H medium borderline
Lusiscaffold250142680.1 Flavonoid F3H medium pass
Lusiscaffold250142940.1 Flavonoid F3H low borderline
Lusiscaffold2510147800.1 Flavonoid F3H medium borderline
Lusiscaffold2520149010.1 Flavonoid F3H medium borderline
Lusiscaffold2520149020.1 Flavonoid F3H medium borderline
Lusiscaffold2520149110.1 Flavonoid F3H medium borderline
Lusiscaffold25930151960.1 Flavonoid F3H medium borderline
Lusiscaffold2610153180.1 Flavonoid F3H medium borderline
Lusiscaffold2610153790.1 Flavonoid F3H medium borderline
Lusiscaffold2670155860.1 Flavonoid F3H medium borderline
Lusiscaffold2720162920.1 Flavonoid F3H medium borderline
Lusiscaffold2720162930.1 Flavonoid F3H medium borderline
Lusiscaffold2800176010.1 Flavonoid F3H low borderline
Lusiscaffold2800177100.1 Flavonoid F3H medium borderline
Lusiscaffold280169470.1 Flavonoid F3H low borderline
Lusiscaffold280171680.1 Flavonoid F3H medium pass
Lusiscaffold290181020.1 Flavonoid F3H low borderline
Lusiscaffold2920185230.1 Flavonoid F3H medium borderline
Lusiscaffold29320187410.1 Flavonoid F3H medium borderline
Lusiscaffold29320187540.1 Flavonoid F3H medium borderline
Lusiscaffold2940188030.1 Flavonoid F3H medium borderline
Lusiscaffold3000192720.1 Flavonoid F3H medium borderline
Lusiscaffold3000192740.1 Flavonoid F3H medium borderline
Lusiscaffold3250213820.1 Flavonoid F3H low borderline
Lusiscaffold3250214290.1 Flavonoid F3H low borderline
Lusiscaffold340222820.1 Flavonoid F3H low borderline
Lusiscaffold340223690.1 Flavonoid F3H medium pass
Lusiscaffold340225260.1 Flavonoid F3H low borderline