PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.93% Alkaloid pathway 22.69% Phenylpropanoid pathway 20.45% Flavonoid pathway 13.01% Rosmarinic acid pathway 9.1% Steroid pathway 4.82%
Family Distribution
C4H 6.24% C3'H/CYP98A 6.02% BAHD 5.99% UGT 4.32% CYP76 3.91% POD 3.8% 7DLGT 3.61% UFGT 3.58%
Other Families 62.53%
More Families (98)
IFS 213 3.56% 4CL 213 3.56% T3O 204 3.41% F3H 161 2.69% F3'H/CYP75B 132 2.21% DWF4/CYP90B1 128 2.14% BR6OX2/CYP85A2 125 2.09% NMT 120 2.01% TRI/TRII 107 1.79% STR 106 1.77% CYP71 99 1.66% CODM/T6ODM 95 1.59% CAD 91 1.52% SMT1/SMT2/SMT3 84 1.41% H6H 74 1.24% CSE 72 1.2% LAC 71 1.19% CAS 62 1.04% TPS 61 1.02% PYKS 58 0.97% SGD 57 0.95% IFR 57 0.95% HCT 56 0.94% CYP90D1 53 0.89% GES 51 0.85% T16H 51 0.85% BBE 45 0.75% 7DLH 45 0.75% COMT 45 0.75% RAS 45 0.75% IO 43 0.72% GS 41 0.69% F3'5'H/CYP75A 38 0.64% G8O/G8H 37 0.62% ANR 37 0.62% PMT 33 0.55% NCS 33 0.55% SLS 32 0.54% 16OMT 32 0.54% TAT 32 0.54% FNS 30 0.5% CYP51G1 30 0.5% F5H/CYP84A 26 0.43% BR6OX1/CYP85A1 26 0.43% CCR 25 0.42% 8HGO 22 0.37% DFR 21 0.35% COR 20 0.33% CPD/CYP90A1 20 0.33% PAL 19 0.32% ANS/LDOX 18 0.3% CNMT 17 0.28% MPO 17 0.28% CPR 17 0.28% ROT3/CYP90C1 17 0.28% GGPPS 17 0.28% HPPR 16 0.27% ISY 15 0.25% CYP80B1 15 0.25% CHS 13 0.22% DXS 13 0.22% SQS/FDFT1 12 0.2% AACT 12 0.2% CYP719 11 0.18% SMO1/SMO2 11 0.18% FPPS 11 0.18% CCoAOMT 10 0.17% MVK 9 0.15% DET2 8 0.13% MVD 8 0.13% CHI 7 0.12% HYD1 7 0.12% SQE 6 0.1% TYDC_DDC 5 0.08% 6OMT_4OMT_SOMT 5 0.08% LAMT 5 0.08% DWF5 5 0.08% HDR/IspH 5 0.08% HDS/IspG 5 0.08% MCT/IspD 4 0.07% CYP80F1 3 0.05% ADC 3 0.05% DWF1 3 0.05% PMK 3 0.05% MDS/IspF 3 0.05% TDC 2 0.03% ODC 2 0.03% XMT_MXMT_DXMT 2 0.03% FLS 2 0.03% DWF7 2 0.03% CPI1 2 0.03% HMGS 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% IDI 2 0.03% HMGR 2 0.03% FK 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status Best Target
Lusiscaffold9310422770.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Lusiscaffold9310422780.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Lusiscaffold9310422790.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Lusiscaffold9310422830.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Lusiscaffold9310422840.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Lusiscaffold9310422850.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Lusiscaffold960425910.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Lusiscaffold9700428120.1 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Lusiscaffold9700428160.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Lusiscaffold9700428180.1 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Lusiscaffold9770430080.1 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ