PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
Lusiscaffold10990014370.1 Flavonoid IFR low borderline
Lusiscaffold11200017040.1 Flavonoid IFR medium pass
Lusiscaffold11860028050.1 Flavonoid IFR low borderline
Lusiscaffold11860028210.1 Flavonoid IFR high pass
Lusiscaffold11860028230.1 Flavonoid IFR high pass
Lusiscaffold11860028240.1 Flavonoid IFR medium pass
Lusiscaffold11860028250.1 Flavonoid IFR medium pass
Lusiscaffold12160033950.1 Flavonoid IFR high pass
Lusiscaffold12160033960.1 Flavonoid IFR high pass
Lusiscaffold1230038680.1 Flavonoid IFR high pass
Lusiscaffold1230038690.1 Flavonoid IFR high pass
Lusiscaffold1230038700.1 Flavonoid IFR high pass
Lusiscaffold1230039030.1 Flavonoid IFR low borderline
Lusiscaffold13170049240.1 Flavonoid IFR low borderline
Lusiscaffold1400056900.1 Flavonoid IFR high pass
Lusiscaffold1560081150.1 Flavonoid IFR low borderline
Lusiscaffold1570081450.1 Flavonoid IFR low borderline
Lusiscaffold160084850.1 Flavonoid IFR low borderline
Lusiscaffold160085380.1 Flavonoid IFR low borderline
Lusiscaffold2080120330.1 Flavonoid IFR low borderline
Lusiscaffold2170126840.1 Flavonoid IFR low borderline
Lusiscaffold250142360.1 Flavonoid IFR medium pass
Lusiscaffold2590151640.1 Flavonoid IFR medium pass
Lusiscaffold2800172480.1 Flavonoid IFR low borderline
Lusiscaffold280170930.1 Flavonoid IFR low borderline
Lusiscaffold290181120.1 Flavonoid IFR low borderline
Lusiscaffold29740190670.1 Flavonoid IFR low borderline
Lusiscaffold3390221330.1 Flavonoid IFR low borderline
Lusiscaffold3600237850.1 Flavonoid IFR low borderline
Lusiscaffold370242750.1 Flavonoid IFR low borderline
Lusiscaffold380252900.1 Flavonoid IFR low borderline
Lusiscaffold430270320.1 Flavonoid IFR high pass
Lusiscaffold4400276390.1 Flavonoid IFR low borderline
Lusiscaffold4540278020.1 Flavonoid IFR low borderline
Lusiscaffold4550279580.1 Flavonoid IFR low borderline
Lusiscaffold4640288530.1 Flavonoid IFR low borderline
Lusiscaffold4730295430.1 Flavonoid IFR low borderline
Lusiscaffold4750296240.1 Flavonoid IFR medium pass
Lusiscaffold4880301330.1 Flavonoid IFR low borderline
Lusiscaffold540313270.1 Flavonoid IFR low borderline
Lusiscaffold5460316950.1 Flavonoid IFR low borderline
Lusiscaffold590329020.1 Flavonoid IFR medium pass
Lusiscaffold660350610.1 Flavonoid IFR low borderline
Lusiscaffold7830382610.1 Flavonoid IFR low borderline
Lusiscaffold80385980.1 Flavonoid IFR low borderline
Lusiscaffold8580394600.1 Flavonoid IFR low borderline
Lusiscaffold8590395010.1 Flavonoid IFR low borderline
Lusiscaffold860398790.1 Flavonoid IFR high pass
Lusiscaffold860398800.1 Flavonoid IFR high pass
Lusiscaffold8630401520.1 Flavonoid IFR low borderline