Linum usitatissimum (linum_usitatissimum)
Imported from atlas release summary for Linum usitatissimum.
2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2406
Candidate Genes
C4H
6.24%
C3'H/CYP98A
6.02%
BAHD
5.99%
UGT
4.32%
CYP76
3.91%
POD
3.8%
7DLGT
3.61%
UFGT
3.58%
Other Families
62.53%
More Families (98)
IFS
213
3.56%
4CL
213
3.56%
T3O
204
3.41%
F3H
161
2.69%
F3'H/CYP75B
132
2.21%
DWF4/CYP90B1
128
2.14%
BR6OX2/CYP85A2
125
2.09%
NMT
120
2.01%
TRI/TRII
107
1.79%
STR
106
1.77%
CYP71
99
1.66%
CODM/T6ODM
95
1.59%
CAD
91
1.52%
SMT1/SMT2/SMT3
84
1.41%
H6H
74
1.24%
CSE
72
1.2%
LAC
71
1.19%
CAS
62
1.04%
TPS
61
1.02%
PYKS
58
0.97%
SGD
57
0.95%
IFR
57
0.95%
HCT
56
0.94%
CYP90D1
53
0.89%
GES
51
0.85%
T16H
51
0.85%
BBE
45
0.75%
7DLH
45
0.75%
COMT
45
0.75%
RAS
45
0.75%
IO
43
0.72%
GS
41
0.69%
F3'5'H/CYP75A
38
0.64%
G8O/G8H
37
0.62%
ANR
37
0.62%
PMT
33
0.55%
NCS
33
0.55%
SLS
32
0.54%
16OMT
32
0.54%
TAT
32
0.54%
FNS
30
0.5%
CYP51G1
30
0.5%
F5H/CYP84A
26
0.43%
BR6OX1/CYP85A1
26
0.43%
CCR
25
0.42%
8HGO
22
0.37%
DFR
21
0.35%
COR
20
0.33%
CPD/CYP90A1
20
0.33%
PAL
19
0.32%
ANS/LDOX
18
0.3%
CNMT
17
0.28%
MPO
17
0.28%
CPR
17
0.28%
ROT3/CYP90C1
17
0.28%
GGPPS
17
0.28%
HPPR
16
0.27%
ISY
15
0.25%
CYP80B1
15
0.25%
CHS
13
0.22%
DXS
13
0.22%
SQS/FDFT1
12
0.2%
AACT
12
0.2%
CYP719
11
0.18%
SMO1/SMO2
11
0.18%
FPPS
11
0.18%
CCoAOMT
10
0.17%
MVK
9
0.15%
DET2
8
0.13%
MVD
8
0.13%
CHI
7
0.12%
HYD1
7
0.12%
SQE
6
0.1%
TYDC_DDC
5
0.08%
6OMT_4OMT_SOMT
5
0.08%
LAMT
5
0.08%
DWF5
5
0.08%
HDR/IspH
5
0.08%
HDS/IspG
5
0.08%
MCT/IspD
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
DWF1
3
0.05%
PMK
3
0.05%
MDS/IspF
3
0.05%
TDC
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
HMGS
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HMGR
2
0.03%
FK
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 720 | 20 | BAHD (265) | View species results |
| Alkaloid pathway | 546 | 26 | 7DLGT (120) | View species results |
| Phenylpropanoid pathway | 492 | 12 | POD (211) | View species results |
| Flavonoid pathway | 313 | 11 | UFGT (198) | View species results |
| Rosmarinic acid pathway | 219 | 7 | C4H (89) | View species results |
| Steroid pathway | 116 | 12 | CAS (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2315 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Lusiscaffold420265790.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Lusiscaffold420267140.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold430270740.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Lusiscaffold430271780.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold440275340.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold440275350.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold4540277910.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold4620283260.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Lusiscaffold4720291440.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold4720291450.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Lusiscaffold4750297660.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold4750297670.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold4800299390.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Lusiscaffold4800299400.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Lusiscaffold4800299450.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Lusiscaffold4800299460.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Lusiscaffold4870300270.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold4880302350.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Lusiscaffold4910303590.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold4910303600.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold5050306400.1 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Lusiscaffold510307900.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold5170311150.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold5170311160.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold53360312920.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Lusiscaffold5360313060.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold5400314390.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Lusiscaffold5400314400.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Lusiscaffold540313630.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold540313660.1 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Lusiscaffold5420316320.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold5420316330.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold5430316380.1 | Phenylpropanoid | POD | low | borderline | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold550318950.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Lusiscaffold5550319630.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold60331790.1 | Phenylpropanoid | POD | medium | pass | POD__00014__sp_Q4W1I9_PER2_ZINEL |
| Lusiscaffold620341700.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Lusiscaffold6410346280.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold6410346290.1 | Phenylpropanoid | POD | low | borderline | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold6450347450.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold6450347470.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold6510348400.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold6510348560.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Lusiscaffold660351720.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Lusiscaffold670354290.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Lusiscaffold6870358430.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Lusiscaffold7110364410.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Lusiscaffold7510372440.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Lusiscaffold7540372860.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Lusiscaffold760374240.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |