PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Lusiscaffold10002600.1 Alkaloid PYKS low borderline
Lusiscaffold10100004350.1 Alkaloid PYKS high pass
Lusiscaffold10100004380.1 Alkaloid PYKS low borderline
Lusiscaffold10100004390.1 Alkaloid PYKS low borderline
Lusiscaffold10100004400.1 Alkaloid PYKS low borderline
Lusiscaffold1010003760.1 Alkaloid PYKS low borderline
Lusiscaffold11340019230.1 Alkaloid PYKS low borderline
Lusiscaffold12160032960.1 Alkaloid PYKS low borderline
Lusiscaffold1230038750.1 Alkaloid PYKS low borderline
Lusiscaffold1230039450.1 Alkaloid PYKS high pass
Lusiscaffold1320051320.1 Alkaloid PYKS low borderline
Lusiscaffold13470052960.1 Alkaloid PYKS low borderline
Lusiscaffold150069920.1 Alkaloid PYKS medium pass
Lusiscaffold150069940.1 Alkaloid PYKS low borderline
Lusiscaffold1560078090.1 Alkaloid PYKS low borderline
Lusiscaffold1560080270.1 Alkaloid PYKS low borderline
Lusiscaffold1560081040.1 Alkaloid PYKS low borderline
Lusiscaffold1640090130.1 Alkaloid PYKS low borderline
Lusiscaffold2170125250.1 Alkaloid PYKS low borderline
Lusiscaffold2270132410.1 Alkaloid PYKS low borderline
Lusiscaffold2440140890.1 Alkaloid PYKS low borderline
Lusiscaffold2440140900.1 Alkaloid PYKS low borderline
Lusiscaffold250145680.1 Alkaloid PYKS low borderline
Lusiscaffold2720158320.1 Alkaloid PYKS low borderline
Lusiscaffold2720158870.1 Alkaloid PYKS medium pass
Lusiscaffold2720158880.1 Alkaloid PYKS high pass
Lusiscaffold2790167430.1 Alkaloid PYKS low borderline
Lusiscaffold2800174970.1 Alkaloid PYKS low borderline
Lusiscaffold2910182210.1 Alkaloid PYKS low borderline
Lusiscaffold3030193840.1 Alkaloid PYKS low borderline
Lusiscaffold3100204230.1 Alkaloid PYKS low borderline
Lusiscaffold3100205680.1 Alkaloid PYKS low borderline
Lusiscaffold330219030.1 Alkaloid PYKS low borderline
Lusiscaffold330219050.1 Alkaloid PYKS low borderline
Lusiscaffold3490231020.1 Alkaloid PYKS low borderline
Lusiscaffold4160260440.1 Alkaloid PYKS low borderline
Lusiscaffold5050306480.1 Alkaloid PYKS high pass
Lusiscaffold5400315660.1 Alkaloid PYKS low borderline
Lusiscaffold5680320740.1 Alkaloid PYKS high pass
Lusiscaffold5680320750.1 Alkaloid PYKS medium pass
Lusiscaffold5680320760.1 Alkaloid PYKS high pass
Lusiscaffold60332250.1 Alkaloid PYKS high pass
Lusiscaffold7010362240.1 Alkaloid PYKS low borderline
Lusiscaffold7010362250.1 Alkaloid PYKS low borderline
Lusiscaffold7010362260.1 Alkaloid PYKS low borderline
Lusiscaffold7010363160.1 Alkaloid PYKS high pass
Lusiscaffold7220366460.1 Alkaloid PYKS low borderline
Lusiscaffold810387670.1 Alkaloid PYKS low borderline
Lusiscaffold8470393750.1 Alkaloid PYKS low borderline
Lusiscaffold8580394420.1 Alkaloid PYKS low borderline