PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Lusiscaffold2250131660.1 Alkaloid T3O low borderline
Lusiscaffold2250131710.1 Alkaloid T3O medium borderline
Lusiscaffold23030135890.1 Alkaloid T3O medium borderline
Lusiscaffold2310136970.1 Alkaloid T3O low borderline
Lusiscaffold2390138680.1 Alkaloid T3O medium borderline
Lusiscaffold240139040.1 Alkaloid T3O medium borderline
Lusiscaffold250145780.1 Alkaloid T3O medium borderline
Lusiscaffold250145800.1 Alkaloid T3O medium borderline
Lusiscaffold250145810.1 Alkaloid T3O medium borderline
Lusiscaffold250146250.1 Alkaloid T3O medium pass
Lusiscaffold250146300.1 Alkaloid T3O medium borderline
Lusiscaffold250146460.1 Alkaloid T3O low borderline
Lusiscaffold2610153080.1 Alkaloid T3O medium borderline
Lusiscaffold2720158910.1 Alkaloid T3O medium borderline
Lusiscaffold2720159420.1 Alkaloid T3O low borderline
Lusiscaffold2720160170.1 Alkaloid T3O low borderline
Lusiscaffold2720160470.1 Alkaloid T3O medium borderline
Lusiscaffold2720161740.1 Alkaloid T3O medium pass
Lusiscaffold2720161910.1 Alkaloid T3O medium borderline
Lusiscaffold27390164020.1 Alkaloid T3O medium borderline
Lusiscaffold2750164890.1 Alkaloid T3O medium borderline
Lusiscaffold2790167300.1 Alkaloid T3O medium pass
Lusiscaffold2800173060.1 Alkaloid T3O medium pass
Lusiscaffold280168280.1 Alkaloid T3O medium borderline
Lusiscaffold280168700.1 Alkaloid T3O medium borderline
Lusiscaffold2840178290.1 Alkaloid T3O medium borderline
Lusiscaffold2840178330.1 Alkaloid T3O medium borderline
Lusiscaffold28570178610.1 Alkaloid T3O low borderline
Lusiscaffold2910181860.1 Alkaloid T3O medium borderline
Lusiscaffold2910181880.1 Alkaloid T3O medium borderline
Lusiscaffold2910181970.1 Alkaloid T3O medium borderline
Lusiscaffold2910181980.1 Alkaloid T3O medium borderline
Lusiscaffold2910182530.1 Alkaloid T3O low borderline
Lusiscaffold2920185010.1 Alkaloid T3O medium borderline
Lusiscaffold2920186250.1 Alkaloid T3O low borderline
Lusiscaffold300191540.1 Alkaloid T3O medium borderline
Lusiscaffold300192010.1 Alkaloid T3O medium borderline
Lusiscaffold300192030.1 Alkaloid T3O medium borderline
Lusiscaffold3050197080.1 Alkaloid T3O low borderline
Lusiscaffold3060198530.1 Alkaloid T3O medium pass
Lusiscaffold3100203340.1 Alkaloid T3O medium borderline
Lusiscaffold3100204040.1 Alkaloid T3O medium borderline
Lusiscaffold3100204810.1 Alkaloid T3O medium pass
Lusiscaffold3100205010.1 Alkaloid T3O medium borderline
Lusiscaffold310201300.1 Alkaloid T3O low borderline
Lusiscaffold3190210010.1 Alkaloid T3O medium borderline
Lusiscaffold3190210170.1 Alkaloid T3O medium pass
Lusiscaffold3250214090.1 Alkaloid T3O medium borderline
Lusiscaffold3270215210.1 Alkaloid T3O low borderline
Lusiscaffold3270216890.1 Alkaloid T3O medium pass