PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Lusiscaffold340222710.1 Alkaloid T3O medium borderline
Lusiscaffold340225380.1 Alkaloid T3O medium borderline
Lusiscaffold3460229140.1 Alkaloid T3O medium pass
Lusiscaffold3490230660.1 Alkaloid T3O medium borderline
Lusiscaffold3490230690.1 Alkaloid T3O medium borderline
Lusiscaffold3490230710.1 Alkaloid T3O medium borderline
Lusiscaffold3490230790.1 Alkaloid T3O medium borderline
Lusiscaffold3490231380.1 Alkaloid T3O low borderline
Lusiscaffold3590236970.1 Alkaloid T3O medium borderline
Lusiscaffold3630241410.1 Alkaloid T3O low borderline
Lusiscaffold3720244600.1 Alkaloid T3O medium borderline
Lusiscaffold3730246060.1 Alkaloid T3O medium borderline
Lusiscaffold3760248900.1 Alkaloid T3O medium borderline
Lusiscaffold3760249550.1 Alkaloid T3O low borderline
Lusiscaffold390255520.1 Alkaloid T3O medium borderline
Lusiscaffold3910255640.1 Alkaloid T3O low borderline
Lusiscaffold4130257550.1 Alkaloid T3O medium pass
Lusiscaffold4130257710.1 Alkaloid T3O medium borderline
Lusiscaffold4160259510.1 Alkaloid T3O medium borderline
Lusiscaffold4300273250.1 Alkaloid T3O medium borderline
Lusiscaffold440275500.1 Alkaloid T3O medium borderline
Lusiscaffold4610281640.1 Alkaloid T3O medium borderline
Lusiscaffold4610281690.1 Alkaloid T3O medium borderline
Lusiscaffold4620284630.1 Alkaloid T3O medium pass
Lusiscaffold4640286360.1 Alkaloid T3O medium borderline
Lusiscaffold4640288400.1 Alkaloid T3O medium borderline
Lusiscaffold4730293950.1 Alkaloid T3O medium borderline
Lusiscaffold4730293960.1 Alkaloid T3O medium pass
Lusiscaffold4730293970.1 Alkaloid T3O medium borderline
Lusiscaffold4730293990.1 Alkaloid T3O medium borderline
Lusiscaffold4750297110.1 Alkaloid T3O medium pass
Lusiscaffold4880301190.1 Alkaloid T3O medium pass
Lusiscaffold4980303930.1 Alkaloid T3O medium borderline
Lusiscaffold5000305430.1 Alkaloid T3O medium borderline
Lusiscaffold500304500.1 Alkaloid T3O medium borderline
Lusiscaffold500304510.1 Alkaloid T3O medium borderline
Lusiscaffold5050306870.1 Alkaloid T3O medium borderline
Lusiscaffold5110309420.1 Alkaloid T3O medium borderline
Lusiscaffold5110310020.1 Alkaloid T3O low borderline
Lusiscaffold5240312120.1 Alkaloid T3O medium borderline
Lusiscaffold5400314930.1 Alkaloid T3O medium borderline
Lusiscaffold5400314980.1 Alkaloid T3O medium borderline
Lusiscaffold5400315220.1 Alkaloid T3O medium borderline
Lusiscaffold5400315370.1 Alkaloid T3O medium borderline
Lusiscaffold5400315380.1 Alkaloid T3O medium borderline
Lusiscaffold5400315390.1 Alkaloid T3O medium borderline
Lusiscaffold5400315550.1 Alkaloid T3O medium borderline
Lusiscaffold5400315670.1 Alkaloid T3O medium borderline
Lusiscaffold570324450.1 Alkaloid T3O medium pass
Lusiscaffold570324460.1 Alkaloid T3O medium pass