PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold5840327290.1 Alkaloid T3O low borderline
Lusiscaffold5840327300.1 Alkaloid T3O medium pass
Lusiscaffold5870328130.1 Alkaloid T3O low borderline
Lusiscaffold60331700.1 Alkaloid T3O low borderline
Lusiscaffold60332210.1 Alkaloid T3O medium borderline
Lusiscaffold60332220.1 Alkaloid T3O medium borderline
Lusiscaffold6040332900.1 Alkaloid T3O medium borderline
Lusiscaffold6050335490.1 Alkaloid T3O medium borderline
Lusiscaffold6290343030.1 Alkaloid T3O low borderline
Lusiscaffold6410346770.1 Alkaloid T3O high pass
Lusiscaffold6410346780.1 Alkaloid T3O low borderline
Lusiscaffold6410346970.1 Alkaloid T3O medium pass
Lusiscaffold660350480.1 Alkaloid T3O medium pass
Lusiscaffold670353780.1 Alkaloid T3O medium pass
Lusiscaffold670353890.1 Alkaloid T3O medium pass
Lusiscaffold670355250.1 Alkaloid T3O low borderline
Lusiscaffold670355520.1 Alkaloid T3O medium borderline
Lusiscaffold6800357610.1 Alkaloid T3O medium borderline
Lusiscaffold6870358210.1 Alkaloid T3O medium borderline
Lusiscaffold7010361230.1 Alkaloid T3O medium borderline
Lusiscaffold7010362320.1 Alkaloid T3O medium borderline
Lusiscaffold7010362330.1 Alkaloid T3O medium borderline
Lusiscaffold7110364610.1 Alkaloid T3O medium borderline
Lusiscaffold7220366040.1 Alkaloid T3O medium borderline
Lusiscaffold7340368820.1 Alkaloid T3O low borderline
Lusiscaffold740369380.1 Alkaloid T3O medium pass
Lusiscaffold7430370340.1 Alkaloid T3O medium borderline
Lusiscaffold7440371220.1 Alkaloid T3O medium borderline
Lusiscaffold7510372390.1 Alkaloid T3O low borderline
Lusiscaffold760374060.1 Alkaloid T3O medium pass
Lusiscaffold760375230.1 Alkaloid T3O low borderline
Lusiscaffold760375780.1 Alkaloid T3O medium borderline
Lusiscaffold7650378060.1 Alkaloid T3O medium borderline
Lusiscaffold7650378070.1 Alkaloid T3O medium borderline
Lusiscaffold7830382240.1 Alkaloid T3O medium borderline
Lusiscaffold820390030.1 Alkaloid T3O low borderline
Lusiscaffold820390070.1 Alkaloid T3O medium borderline
Lusiscaffold820390090.1 Alkaloid T3O medium borderline
Lusiscaffold820390110.1 Alkaloid T3O medium pass
Lusiscaffold8580394310.1 Alkaloid T3O medium borderline
Lusiscaffold860395570.1 Alkaloid T3O medium borderline
Lusiscaffold860396300.1 Alkaloid T3O medium pass
Lusiscaffold8980408970.1 Alkaloid T3O medium borderline
Lusiscaffold9060415090.1 Alkaloid T3O medium borderline
Lusiscaffold9060415110.1 Alkaloid T3O medium borderline
Lusiscaffold9060415130.1 Alkaloid T3O medium borderline
Lusiscaffold9060415630.1 Alkaloid T3O medium pass
Lusiscaffold9060415840.1 Alkaloid T3O low borderline
Lusiscaffold9150417770.1 Alkaloid T3O medium borderline
Lusiscaffold9150417790.1 Alkaloid T3O medium borderline