PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Lusiscaffold3080198940.1 Flavonoid UFGT high pass
Lusiscaffold310200870.1 Flavonoid UFGT medium pass
Lusiscaffold310200900.1 Flavonoid UFGT medium pass
Lusiscaffold310202170.1 Flavonoid UFGT high pass
Lusiscaffold310202190.1 Flavonoid UFGT medium pass
Lusiscaffold3170208790.1 Flavonoid UFGT low borderline
Lusiscaffold330217410.1 Flavonoid UFGT medium pass
Lusiscaffold330217810.1 Flavonoid UFGT medium pass
Lusiscaffold330218050.1 Flavonoid UFGT high pass
Lusiscaffold330218060.1 Flavonoid UFGT medium pass
Lusiscaffold340225120.1 Flavonoid UFGT medium pass
Lusiscaffold340225160.1 Flavonoid UFGT high pass
Lusiscaffold3440227660.1 Flavonoid UFGT high pass
Lusiscaffold3440227670.1 Flavonoid UFGT high pass
Lusiscaffold3440227680.1 Flavonoid UFGT medium pass
Lusiscaffold3460228580.1 Flavonoid UFGT low borderline
Lusiscaffold3460228730.1 Flavonoid UFGT low borderline
Lusiscaffold3490230770.1 Flavonoid UFGT medium pass
Lusiscaffold3490230780.1 Flavonoid UFGT medium pass
Lusiscaffold350232510.1 Flavonoid UFGT medium pass
Lusiscaffold3530233790.1 Flavonoid UFGT medium pass
Lusiscaffold3530233810.1 Flavonoid UFGT medium pass
Lusiscaffold3530234610.1 Flavonoid UFGT high pass
Lusiscaffold3530234620.1 Flavonoid UFGT high pass
Lusiscaffold3580236490.1 Flavonoid UFGT high pass
Lusiscaffold3580236500.1 Flavonoid UFGT medium pass
Lusiscaffold3610240600.1 Flavonoid UFGT medium pass
Lusiscaffold3610240620.1 Flavonoid UFGT medium pass
Lusiscaffold3760250520.1 Flavonoid UFGT high pass
Lusiscaffold4220269120.1 Flavonoid UFGT high pass
Lusiscaffold4220269130.1 Flavonoid UFGT medium pass
Lusiscaffold4300272810.1 Flavonoid UFGT medium pass
Lusiscaffold4300272820.1 Flavonoid UFGT medium pass
Lusiscaffold4300272830.1 Flavonoid UFGT medium pass
Lusiscaffold4300272850.1 Flavonoid UFGT medium pass
Lusiscaffold4300272860.1 Flavonoid UFGT medium pass
Lusiscaffold4300272870.1 Flavonoid UFGT medium pass
Lusiscaffold4300272880.1 Flavonoid UFGT medium pass
Lusiscaffold4300272890.1 Flavonoid UFGT low borderline
Lusiscaffold4300272900.1 Flavonoid UFGT medium pass
Lusiscaffold4540278180.1 Flavonoid UFGT medium pass
Lusiscaffold4620283040.1 Flavonoid UFGT low borderline
Lusiscaffold4620283070.1 Flavonoid UFGT low borderline
Lusiscaffold4620284580.1 Flavonoid UFGT high pass
Lusiscaffold4640288150.1 Flavonoid UFGT high pass
Lusiscaffold4680290760.1 Flavonoid UFGT medium pass
Lusiscaffold4680290770.1 Flavonoid UFGT high pass
Lusiscaffold4720293150.1 Flavonoid UFGT high pass
Lusiscaffold4730294130.1 Flavonoid UFGT medium pass
Lusiscaffold4900303100.1 Flavonoid UFGT medium pass