PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold3590236790.1 Flavonoid F3H low borderline
Lusiscaffold3590236820.1 Flavonoid F3H low borderline
Lusiscaffold3590236830.1 Flavonoid F3H low borderline
Lusiscaffold3590236840.1 Flavonoid F3H medium borderline
Lusiscaffold3610240680.1 Flavonoid F3H low borderline
Lusiscaffold3760249360.1 Flavonoid F3H medium borderline
Lusiscaffold380252850.1 Flavonoid F3H medium borderline
Lusiscaffold4060256410.1 Flavonoid F3H low borderline
Lusiscaffold4160261560.1 Flavonoid F3H medium borderline
Lusiscaffold4260269380.1 Flavonoid F3H medium borderline
Lusiscaffold4340274310.1 Flavonoid F3H low borderline
Lusiscaffold4620284820.1 Flavonoid F3H medium borderline
Lusiscaffold4640288360.1 Flavonoid F3H medium borderline
Lusiscaffold4640289160.1 Flavonoid F3H medium borderline
Lusiscaffold4730294610.1 Flavonoid F3H medium borderline
Lusiscaffold5000305240.1 Flavonoid F3H medium borderline
Lusiscaffold5000305260.1 Flavonoid F3H medium pass
Lusiscaffold510307940.1 Flavonoid F3H medium borderline
Lusiscaffold5240311970.1 Flavonoid F3H low borderline
Lusiscaffold5240311990.1 Flavonoid F3H low borderline
Lusiscaffold5240312000.1 Flavonoid F3H medium borderline
Lusiscaffold570323140.1 Flavonoid F3H medium borderline
Lusiscaffold5960331060.1 Flavonoid F3H medium borderline
Lusiscaffold6050334070.1 Flavonoid F3H low borderline
Lusiscaffold6050334720.1 Flavonoid F3H low borderline
Lusiscaffold6490347660.1 Flavonoid F3H medium borderline
Lusiscaffold6740356990.1 Flavonoid F3H medium borderline
Lusiscaffold7310367690.1 Flavonoid F3H medium borderline
Lusiscaffold7510372480.1 Flavonoid F3H medium borderline
Lusiscaffold760375810.1 Flavonoid F3H medium borderline
Lusiscaffold7650378310.1 Flavonoid F3H medium borderline
Lusiscaffold770379820.1 Flavonoid F3H low borderline
Lusiscaffold7830382210.1 Flavonoid F3H medium borderline
Lusiscaffold7830384150.1 Flavonoid F3H medium pass
Lusiscaffold8120388500.1 Flavonoid F3H medium borderline
Lusiscaffold820389460.1 Flavonoid F3H medium pass
Lusiscaffold860395490.1 Flavonoid F3H medium borderline
Lusiscaffold860398170.1 Flavonoid F3H medium borderline
Lusiscaffold860398190.1 Flavonoid F3H medium borderline
Lusiscaffold8630402470.1 Flavonoid F3H medium borderline
Lusiscaffold8660404300.1 Flavonoid F3H medium borderline
Lusiscaffold8830406820.1 Flavonoid F3H low borderline
Lusiscaffold8980408180.1 Flavonoid F3H medium borderline
Lusiscaffold9060414850.1 Flavonoid F3H medium borderline
Lusiscaffold9150418370.1 Flavonoid F3H low borderline
Lusiscaffold9170420180.1 Flavonoid F3H medium borderline
Lusiscaffold9240421630.1 Flavonoid F3H medium borderline
Lusiscaffold9310422770.1 Flavonoid F3H medium borderline
Lusiscaffold9310422780.1 Flavonoid F3H medium borderline
Lusiscaffold9310422790.1 Flavonoid F3H medium borderline