PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold240139040.1 Terpenoid CYP76 medium pass
Lusiscaffold250145760.1 Terpenoid CYP76 medium borderline
Lusiscaffold250145780.1 Terpenoid CYP76 medium borderline
Lusiscaffold250145790.1 Terpenoid CYP76 medium pass
Lusiscaffold250145800.1 Terpenoid CYP76 medium borderline
Lusiscaffold250145810.1 Terpenoid CYP76 medium borderline
Lusiscaffold2510147580.1 Terpenoid CYP76 medium pass
Lusiscaffold2510147590.1 Terpenoid CYP76 medium pass
Lusiscaffold2720158910.1 Terpenoid CYP76 medium borderline
Lusiscaffold2720160230.1 Terpenoid CYP76 medium pass
Lusiscaffold2720161180.1 Terpenoid CYP76 medium pass
Lusiscaffold2720161910.1 Terpenoid CYP76 medium borderline
Lusiscaffold27390164020.1 Terpenoid CYP76 low borderline
Lusiscaffold2740164280.1 Terpenoid CYP76 low borderline
Lusiscaffold2750164890.1 Terpenoid CYP76 medium borderline
Lusiscaffold280168480.1 Terpenoid CYP76 medium pass
Lusiscaffold280168700.1 Terpenoid CYP76 medium borderline
Lusiscaffold280168720.1 Terpenoid CYP76 medium pass
Lusiscaffold280168730.1 Terpenoid CYP76 medium pass
Lusiscaffold2840178330.1 Terpenoid CYP76 medium borderline
Lusiscaffold2910181850.1 Terpenoid CYP76 low borderline
Lusiscaffold2910181860.1 Terpenoid CYP76 medium pass
Lusiscaffold2910181880.1 Terpenoid CYP76 medium borderline
Lusiscaffold2910181890.1 Terpenoid CYP76 medium pass
Lusiscaffold2910181900.1 Terpenoid CYP76 medium pass
Lusiscaffold2910181910.1 Terpenoid CYP76 medium pass
Lusiscaffold2910181920.1 Terpenoid CYP76 medium pass
Lusiscaffold2910181970.1 Terpenoid CYP76 medium borderline
Lusiscaffold2910181980.1 Terpenoid CYP76 medium borderline
Lusiscaffold2910183140.1 Terpenoid CYP76 medium pass
Lusiscaffold2920186470.1 Terpenoid CYP76 medium pass
Lusiscaffold300191540.1 Terpenoid CYP76 medium borderline
Lusiscaffold3060197920.1 Terpenoid CYP76 low borderline
Lusiscaffold3100204040.1 Terpenoid CYP76 medium borderline
Lusiscaffold3100205530.1 Terpenoid CYP76 medium pass
Lusiscaffold310200660.1 Terpenoid CYP76 low borderline
Lusiscaffold310200700.1 Terpenoid CYP76 low borderline
Lusiscaffold310200730.1 Terpenoid CYP76 medium pass
Lusiscaffold310201920.1 Terpenoid CYP76 low borderline
Lusiscaffold3190210010.1 Terpenoid CYP76 medium borderline
Lusiscaffold3250214110.1 Terpenoid CYP76 medium borderline
Lusiscaffold3250214120.1 Terpenoid CYP76 low borderline
Lusiscaffold3250214130.1 Terpenoid CYP76 low borderline
Lusiscaffold3270215040.1 Terpenoid CYP76 medium borderline
Lusiscaffold3270215050.1 Terpenoid CYP76 low borderline
Lusiscaffold3270216090.1 Terpenoid CYP76 medium pass
Lusiscaffold3460228800.1 Terpenoid CYP76 low borderline
Lusiscaffold3460229400.1 Terpenoid CYP76 low borderline
Lusiscaffold3490230660.1 Terpenoid CYP76 medium borderline
Lusiscaffold3490230670.1 Terpenoid CYP76 medium pass