PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Lusiscaffold1230037990.1 Alkaloid 7DLGT low borderline
Lusiscaffold1230038160.1 Alkaloid 7DLGT low borderline
Lusiscaffold1230038170.1 Alkaloid 7DLGT low borderline
Lusiscaffold1230038180.1 Alkaloid 7DLGT low borderline
Lusiscaffold1230038190.1 Alkaloid 7DLGT low borderline
Lusiscaffold1230038210.1 Alkaloid 7DLGT low borderline
Lusiscaffold12470041520.1 Alkaloid 7DLGT medium pass
Lusiscaffold12470041530.1 Alkaloid 7DLGT medium pass
Lusiscaffold12470041550.1 Alkaloid 7DLGT medium pass
Lusiscaffold12470041560.1 Alkaloid 7DLGT low borderline
Lusiscaffold12470041570.1 Alkaloid 7DLGT low borderline
Lusiscaffold12470041590.1 Alkaloid 7DLGT medium pass
Lusiscaffold12470041780.1 Alkaloid 7DLGT medium pass
Lusiscaffold12530043660.1 Alkaloid 7DLGT high pass
Lusiscaffold130045540.1 Alkaloid 7DLGT high pass
Lusiscaffold1370054120.1 Alkaloid 7DLGT low borderline
Lusiscaffold1370054150.1 Alkaloid 7DLGT low borderline
Lusiscaffold1370054170.1 Alkaloid 7DLGT low borderline
Lusiscaffold1370054200.1 Alkaloid 7DLGT low borderline
Lusiscaffold14210059240.1 Alkaloid 7DLGT medium pass
Lusiscaffold14210059250.1 Alkaloid 7DLGT medium pass
Lusiscaffold14210059260.1 Alkaloid 7DLGT medium pass
Lusiscaffold14210059270.1 Alkaloid 7DLGT medium pass
Lusiscaffold1450060260.1 Alkaloid 7DLGT low borderline
Lusiscaffold1450060280.1 Alkaloid 7DLGT low borderline
Lusiscaffold14860063430.1 Alkaloid 7DLGT low borderline
Lusiscaffold14860063440.1 Alkaloid 7DLGT low borderline
Lusiscaffold14910064460.1 Alkaloid 7DLGT high pass
Lusiscaffold14910064470.1 Alkaloid 7DLGT medium pass
Lusiscaffold14910064670.1 Alkaloid 7DLGT low borderline
Lusiscaffold14910064690.1 Alkaloid 7DLGT low borderline
Lusiscaffold14910064700.1 Alkaloid 7DLGT low borderline
Lusiscaffold14910064710.1 Alkaloid 7DLGT medium pass
Lusiscaffold14910064730.1 Alkaloid 7DLGT medium pass
Lusiscaffold150066760.1 Alkaloid 7DLGT medium pass
Lusiscaffold1550076620.1 Alkaloid 7DLGT medium pass
Lusiscaffold1560077640.1 Alkaloid 7DLGT high pass
Lusiscaffold1560078220.1 Alkaloid 7DLGT medium pass
Lusiscaffold1560079560.1 Alkaloid 7DLGT high pass
Lusiscaffold1570081760.1 Alkaloid 7DLGT low borderline
Lusiscaffold1590083090.1 Alkaloid 7DLGT low borderline
Lusiscaffold16710092230.1 Alkaloid 7DLGT low borderline
Lusiscaffold16710092240.1 Alkaloid 7DLGT medium pass
Lusiscaffold16710092250.1 Alkaloid 7DLGT medium pass
Lusiscaffold1760097530.1 Alkaloid 7DLGT low borderline
Lusiscaffold1760097540.1 Alkaloid 7DLGT low borderline
Lusiscaffold1760097550.1 Alkaloid 7DLGT medium pass
Lusiscaffold1760097560.1 Alkaloid 7DLGT low borderline
Lusiscaffold1760097890.1 Alkaloid 7DLGT medium pass
Lusiscaffold1770098820.1 Alkaloid 7DLGT medium pass