PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold4750296460.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold5470317820.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold5720324780.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold60332340.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold6050334890.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold6120337480.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold6170339030.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold6180340940.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold6410346650.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold670354440.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold6800357460.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold760375260.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold7680378770.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold7720380430.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold820390190.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold8630400840.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold8670405030.1 Rosmarinic Acid 4CL low borderline
Lusiscaffold9150418080.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold960426690.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold960426700.1 Rosmarinic Acid 4CL medium pass
Lusiscaffold980430870.1 Rosmarinic Acid 4CL low borderline
LusiC82357050000380.1 Rosmarinic Acid C4H medium pass
Lusiscaffold100002770.1 Rosmarinic Acid C4H low borderline
Lusiscaffold100002780.1 Rosmarinic Acid C4H low borderline
Lusiscaffold100002870.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1010003890.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1030005920.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007620.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007630.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10360007640.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10520009610.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10720012250.1 Rosmarinic Acid C4H low borderline
Lusiscaffold10860013730.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11060015490.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11340019120.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11340019240.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11400020590.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11400020600.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1140020080.1 Rosmarinic Acid C4H low borderline
Lusiscaffold11430021510.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11430021530.1 Rosmarinic Acid C4H medium pass
Lusiscaffold11580023790.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1200031020.1 Rosmarinic Acid C4H low borderline
Lusiscaffold120030650.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032270.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032280.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1210032290.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1230035080.1 Rosmarinic Acid C4H medium pass
Lusiscaffold1230039760.1 Rosmarinic Acid C4H low borderline
Lusiscaffold1230040430.1 Rosmarinic Acid C4H low borderline