PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold9060415630.1 Alkaloid T3O medium pass
Lusiscaffold9060415840.1 Alkaloid T3O low borderline
Lusiscaffold9150417770.1 Alkaloid T3O medium borderline
Lusiscaffold9150417790.1 Alkaloid T3O medium borderline
Lusiscaffold9170419820.1 Alkaloid T3O medium borderline
Lusiscaffold960426180.1 Alkaloid T3O medium borderline
Lusiscaffold960426200.1 Alkaloid T3O medium borderline
Lusiscaffold960426260.1 Alkaloid T3O low borderline
Lusiscaffold1030005910.1 Alkaloid TDC low borderline
Lusiscaffold3460228780.1 Alkaloid TDC low borderline
Lusiscaffold11230017590.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230017600.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018130.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018140.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018150.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018160.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018200.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018210.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11230018220.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11350019400.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11360019710.1 Alkaloid TRI/TRII medium pass
Lusiscaffold11430022590.1 Alkaloid TRI/TRII medium borderline
Lusiscaffold1230037380.1 Alkaloid TRI/TRII medium pass
Lusiscaffold14210059580.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079600.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079610.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079620.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079630.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079640.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079660.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079670.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1560079680.1 Alkaloid TRI/TRII medium pass
Lusiscaffold15950083620.1 Alkaloid TRI/TRII medium borderline
Lusiscaffold160084600.1 Alkaloid TRI/TRII medium pass
Lusiscaffold160084610.1 Alkaloid TRI/TRII medium pass
Lusiscaffold160084620.1 Alkaloid TRI/TRII medium pass
Lusiscaffold160084630.1 Alkaloid TRI/TRII medium pass
Lusiscaffold16300088160.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1630087670.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1640090490.1 Alkaloid TRI/TRII low borderline
Lusiscaffold1790100450.1 Alkaloid TRI/TRII medium pass
Lusiscaffold1790101200.1 Alkaloid TRI/TRII low borderline
Lusiscaffold1790101210.1 Alkaloid TRI/TRII low borderline
Lusiscaffold2160124220.1 Alkaloid TRI/TRII low borderline
Lusiscaffold230133290.1 Alkaloid TRI/TRII medium pass
Lusiscaffold230134030.1 Alkaloid TRI/TRII medium pass
Lusiscaffold2310136830.1 Alkaloid TRI/TRII medium pass
Lusiscaffold2310136840.1 Alkaloid TRI/TRII medium pass
Lusiscaffold2310136850.1 Alkaloid TRI/TRII medium pass
Lusiscaffold2720158980.1 Alkaloid TRI/TRII medium pass