Linum usitatissimum (linum_usitatissimum)
Imported from atlas release summary for Linum usitatissimum.
2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5978
Family-Level Calls
C4H
6.24%
C3'H/CYP98A
6.02%
BAHD
5.99%
UGT
4.32%
CYP76
3.91%
POD
3.8%
7DLGT
3.61%
UFGT
3.58%
Other Families
62.53%
More Families (98)
IFS
213
3.56%
4CL
213
3.56%
T3O
204
3.41%
F3H
161
2.69%
F3'H/CYP75B
132
2.21%
DWF4/CYP90B1
128
2.14%
BR6OX2/CYP85A2
125
2.09%
NMT
120
2.01%
TRI/TRII
107
1.79%
STR
106
1.77%
CYP71
99
1.66%
CODM/T6ODM
95
1.59%
CAD
91
1.52%
SMT1/SMT2/SMT3
84
1.41%
H6H
74
1.24%
CSE
72
1.2%
LAC
71
1.19%
CAS
62
1.04%
TPS
61
1.02%
PYKS
58
0.97%
SGD
57
0.95%
IFR
57
0.95%
HCT
56
0.94%
CYP90D1
53
0.89%
GES
51
0.85%
T16H
51
0.85%
BBE
45
0.75%
7DLH
45
0.75%
COMT
45
0.75%
RAS
45
0.75%
IO
43
0.72%
GS
41
0.69%
F3'5'H/CYP75A
38
0.64%
G8O/G8H
37
0.62%
ANR
37
0.62%
PMT
33
0.55%
NCS
33
0.55%
SLS
32
0.54%
16OMT
32
0.54%
TAT
32
0.54%
FNS
30
0.5%
CYP51G1
30
0.5%
F5H/CYP84A
26
0.43%
BR6OX1/CYP85A1
26
0.43%
CCR
25
0.42%
8HGO
22
0.37%
DFR
21
0.35%
COR
20
0.33%
CPD/CYP90A1
20
0.33%
PAL
19
0.32%
ANS/LDOX
18
0.3%
CNMT
17
0.28%
MPO
17
0.28%
CPR
17
0.28%
ROT3/CYP90C1
17
0.28%
GGPPS
17
0.28%
HPPR
16
0.27%
ISY
15
0.25%
CYP80B1
15
0.25%
CHS
13
0.22%
DXS
13
0.22%
SQS/FDFT1
12
0.2%
AACT
12
0.2%
CYP719
11
0.18%
SMO1/SMO2
11
0.18%
FPPS
11
0.18%
CCoAOMT
10
0.17%
MVK
9
0.15%
DET2
8
0.13%
MVD
8
0.13%
CHI
7
0.12%
HYD1
7
0.12%
SQE
6
0.1%
TYDC_DDC
5
0.08%
6OMT_4OMT_SOMT
5
0.08%
LAMT
5
0.08%
DWF5
5
0.08%
HDR/IspH
5
0.08%
HDS/IspG
5
0.08%
MCT/IspD
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
DWF1
3
0.05%
PMK
3
0.05%
MDS/IspF
3
0.05%
TDC
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
HMGS
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HMGR
2
0.03%
FK
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 720 | 20 | BAHD (265) | View species results |
| Alkaloid pathway | 546 | 26 | 7DLGT (120) | View species results |
| Phenylpropanoid pathway | 492 | 12 | POD (211) | View species results |
| Flavonoid pathway | 313 | 11 | UFGT (198) | View species results |
| Rosmarinic acid pathway | 219 | 7 | C4H (89) | View species results |
| Steroid pathway | 116 | 12 | CAS (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2315 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Lusiscaffold660351150.1 | Alkaloid | TRI/TRII | low | borderline |
| Lusiscaffold660351540.1 | Alkaloid | TRI/TRII | low | borderline |
| Lusiscaffold6800357600.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold7010363440.1 | Alkaloid | TRI/TRII | low | borderline |
| Lusiscaffold7680378650.1 | Alkaloid | TRI/TRII | low | borderline |
| Lusiscaffold7730381350.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold8580394320.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold8580394490.1 | Alkaloid | TRI/TRII | low | borderline |
| Lusiscaffold8600400450.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold860397080.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold8980410640.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold90411940.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold9470424630.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold9470424640.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold9470424650.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold9470424660.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold9470424670.1 | Alkaloid | TRI/TRII | medium | pass |
| Lusiscaffold1010003660.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Lusiscaffold13080046320.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Lusiscaffold150068280.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Lusiscaffold4730295450.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Lusiscaffold80385950.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Lusiscaffold2720161560.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Lusiscaffold2910182740.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Lusiscaffold1120016710.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold11680025370.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold11680025380.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1250042620.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1270044530.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold13310051830.1 | Flavonoid | 4CL | low | borderline |
| Lusiscaffold1450061700.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1530073520.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1530073530.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1550075200.1 | Flavonoid | 4CL | low | borderline |
| Lusiscaffold16350088820.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1720094790.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1720094800.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1720094920.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1720095640.1 | Flavonoid | 4CL | low | borderline |
| Lusiscaffold1770098210.1 | Flavonoid | 4CL | low | borderline |
| Lusiscaffold1960110740.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold1960110750.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2250132030.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2250132040.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2720158790.1 | Flavonoid | 4CL | low | borderline |
| Lusiscaffold2720159640.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2720162050.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2730163600.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold2730163740.1 | Flavonoid | 4CL | medium | pass |
| Lusiscaffold280169290.1 | Flavonoid | 4CL | medium | pass |